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The map label for this gene is phnF [C]

Identifier: 89055347

GI number: 89055347

Start: 2875929

End: 2876645

Strand: Direct

Name: phnF [C]

Synonym: Jann_2856

Alternate gene names: 89055347

Gene position: 2875929-2876645 (Clockwise)

Preceding gene: 89055345

Following gene: 89055349

Centisome position: 66.6

GC content: 64.71

Gene sequence:

>717_bases
TTGGGACGCACGGCACTGTGGACGTCGATTCTTGAGACCTTGGCCGAGGAAGTCTCCAACGGCCATTACGGCCCCGGGGA
TCGCCTGCCCACCGAGGCACAATTGGCCAAGCGCTTCGGCGTGAACCGCCACACCGTGCGGCGGGCGCTTGGTGGTCTGG
CAGAGCGGGATATTGTTTTCGCGCGGCGGGGCGCTGGCGTGTTCGTGCGCCACGTCCCCACCCCCTACCCGATTGGTCGC
CGCGTGCGCTTTCATCAAAACCTGGTGGCGGCCAACCGGGTGCCGGAACGCCGGACTCTCCACCTGGAGACGCGGGCCGC
CGATATGGAAGAGGCCGACGCGTTGGCCCTCTCACACACCGCGCAGGTCCACGTATATGAGGGGGTCAGCCTGTCAGACG
GCGTGCCGCTGGCAACCTTCACATCCATCTTTCCGGCAGAGCGGTTCCCGGATTTGCCAAAGGTCCTGGAGGAGGTGAAC
TCTGTCACAAAGACCTTCGCGGCGTTCGAGGTTGAGGATTACACACGGGCGCGCACCGACGTCACGGCACAGATCGCCTC
CAGCACACAGGCCGCCCTCCTTGCCCTGCGTCCCGGCGACGCGCTTCTCGGCACAATCAGCGTCAATGTAGACGGAGCGG
GCACACCCATCGAATATGGACGCACATGGTTTGCGGCCGACCGGGTTACGCTGACGCTGTCAGGGTACGAGAGCTGA

Upstream 100 bases:

>100_bases
AGACATCTTGCGGCGTTGTCCATTTAATTATACAACTATACAAATTCTTACCGTGCGAGCCCGGGCCCGCGCAACACCTT
TCATCGGGAGGTCCACAAAA

Downstream 100 bases:

>100_bases
CACGCCGAGGCGGCGGGCCGCCAGAGGTCCGCAACCAGCCGTGGCCCCAATCCGAGGCGGGCTTTGTGCCCTCACCCAAT
GAGATAGGCATCACGTAATT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MGRTALWTSILETLAEEVSNGHYGPGDRLPTEAQLAKRFGVNRHTVRRALGGLAERDIVFARRGAGVFVRHVPTPYPIGR
RVRFHQNLVAANRVPERRTLHLETRAADMEEADALALSHTAQVHVYEGVSLSDGVPLATFTSIFPAERFPDLPKVLEEVN
SVTKTFAAFEVEDYTRARTDVTAQIASSTQAALLALRPGDALLGTISVNVDGAGTPIEYGRTWFAADRVTLTLSGYES

Sequences:

>Translated_238_residues
MGRTALWTSILETLAEEVSNGHYGPGDRLPTEAQLAKRFGVNRHTVRRALGGLAERDIVFARRGAGVFVRHVPTPYPIGR
RVRFHQNLVAANRVPERRTLHLETRAADMEEADALALSHTAQVHVYEGVSLSDGVPLATFTSIFPAERFPDLPKVLEEVN
SVTKTFAAFEVEDYTRARTDVTAQIASSTQAALLALRPGDALLGTISVNVDGAGTPIEYGRTWFAADRVTLTLSGYES
>Mature_237_residues
GRTALWTSILETLAEEVSNGHYGPGDRLPTEAQLAKRFGVNRHTVRRALGGLAERDIVFARRGAGVFVRHVPTPYPIGRR
VRFHQNLVAANRVPERRTLHLETRAADMEEADALALSHTAQVHVYEGVSLSDGVPLATFTSIFPAERFPDLPKVLEEVNS
VTKTFAAFEVEDYTRARTDVTAQIASSTQAALLALRPGDALLGTISVNVDGAGTPIEYGRTWFAADRVTLTLSGYES

Specific function: Belongs To An Operon Involved In Alkylphosphonate Uptake And C-P Lyase. Exact Function Not Known. By Similarity Could Be A Transcriptional Regulator. [C]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=237, Percent_Identity=30.8016877637131, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1786950, Length=234, Percent_Identity=27.3504273504274, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87082252, Length=233, Percent_Identity=24.0343347639485, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012702
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 25997; Mature: 25865

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRTALWTSILETLAEEVSNGHYGPGDRLPTEAQLAKRFGVNRHTVRRALGGLAERDIVF
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCHHCCEEE
ARRGAGVFVRHVPTPYPIGRRVRFHQNLVAANRVPERRTLHLETRAADMEEADALALSHT
EECCCCEEEEECCCCCCCCCEEHHHHHHHHHCCCCCCEEEEEEHHHCCHHHHHHHHHCCC
AQVHVYEGVSLSDGVPLATFTSIFPAERFPDLPKVLEEVNSVTKTFAAFEVEDYTRARTD
EEEEEEECCCCCCCCCHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHEEHHHHHHHHHH
VTAQIASSTQAALLALRPGDALLGTISVNVDGAGTPIEYGRTWFAADRVTLTLSGYES
HHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCCCCHHHCCEEEEECEEEEEEECCCC
>Mature Secondary Structure 
GRTALWTSILETLAEEVSNGHYGPGDRLPTEAQLAKRFGVNRHTVRRALGGLAERDIVF
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCHHCCEEE
ARRGAGVFVRHVPTPYPIGRRVRFHQNLVAANRVPERRTLHLETRAADMEEADALALSHT
EECCCCEEEEECCCCCCCCCEEHHHHHHHHHCCCCCCEEEEEEHHHCCHHHHHHHHHCCC
AQVHVYEGVSLSDGVPLATFTSIFPAERFPDLPKVLEEVNSVTKTFAAFEVEDYTRARTD
EEEEEEECCCCCCCCCHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHEEHHHHHHHHHH
VTAQIASSTQAALLALRPGDALLGTISVNVDGAGTPIEYGRTWFAADRVTLTLSGYES
HHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCCCCHHHCCEEEEECEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481431; 9889346 [H]