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The map label for this gene is ccmB [H]

Identifier: 89055139

GI number: 89055139

Start: 2662592

End: 2663248

Strand: Direct

Name: ccmB [H]

Synonym: Jann_2648

Alternate gene names: 89055139

Gene position: 2662592-2663248 (Clockwise)

Preceding gene: 89055138

Following gene: 89055140

Centisome position: 61.66

GC content: 70.17

Gene sequence:

>657_bases
GTGATCGGCTTGCTGAAACGGGACCTCGCGCTTGCCCTGCGCGCGGGGGGCGGGTTCGGGCTGAGCCTCGCCTTCTTCCT
GATCTTCACCGCGCTGGTGCCCTTCGGCATCGGGCCCGACTCTGCCCGCCTGTCTGAGATTGCGGCGGGTCTTCTCTGGC
TCGGCGCGCTTTTGGCCTGCCTGCTCTCGCTTGACCGGATCTTTCAACTGGATTGGGAGGATGGCACGCTGGATCTCATC
GCCACGTCCCCGCTGCCGCTGGAGGCCGCCGCTGCCCTGAAGGCCCTGGCCCATTGGCTCACCACCGGGCTGCCTCTGGT
GGCCGCAGCACCTCTCCTGGGCCTCCTCCTGAACCTGCCCGCGCCCGCCTACCCCTGGCTGATCGCCTCGCTGGCCCTTG
GCACACCGGCACTCTCCGCCATCGGCACCTTCGGCGCGGCGCTGACCGTGGGGATCAAGCGGGGCGGACTACTGCTGTCG
CTTCTGGTGCTGCCGCTTTATGTGCCGACGCTGATCTTCGGGGCGCTGGCGGCGACACGCGGCGCCCAGGGCCTCGACGC
CACGACGCCCCTGATCCTGACGGCGGGGATCACGCTGGGGGCCTGCGCCGTCCTGCCCTTTGCAGCCGCCGCCGCGCTCC
GCGTCAATCTGCGCTAG

Upstream 100 bases:

>100_bases
GCCTGCCCAATGCGCGCAGTCTCGACATCACGCCCTTCATCGCCAAGGGGTTGCCCGCGTCCGATCCGTTCGCCGACGAT
CCATTTCTTGGGGCGGCCCT

Downstream 100 bases:

>100_bases
TTTGCGTCCGATCGCCCCATTGTGACGCGCAAATCTCCCGCCTATGTTCCCGCCCATGTCCTCGATCTGGGAATACGCGA
ACCCGCGACGGTTCATGGCC

Product: heme exporter protein CcmB

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmB [H]

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MIGLLKRDLALALRAGGGFGLSLAFFLIFTALVPFGIGPDSARLSEIAAGLLWLGALLACLLSLDRIFQLDWEDGTLDLI
ATSPLPLEAAAALKALAHWLTTGLPLVAAAPLLGLLLNLPAPAYPWLIASLALGTPALSAIGTFGAALTVGIKRGGLLLS
LLVLPLYVPTLIFGALAATRGAQGLDATTPLILTAGITLGACAVLPFAAAAALRVNLR

Sequences:

>Translated_218_residues
MIGLLKRDLALALRAGGGFGLSLAFFLIFTALVPFGIGPDSARLSEIAAGLLWLGALLACLLSLDRIFQLDWEDGTLDLI
ATSPLPLEAAAALKALAHWLTTGLPLVAAAPLLGLLLNLPAPAYPWLIASLALGTPALSAIGTFGAALTVGIKRGGLLLS
LLVLPLYVPTLIFGALAATRGAQGLDATTPLILTAGITLGACAVLPFAAAAALRVNLR
>Mature_218_residues
MIGLLKRDLALALRAGGGFGLSLAFFLIFTALVPFGIGPDSARLSEIAAGLLWLGALLACLLSLDRIFQLDWEDGTLDLI
ATSPLPLEAAAALKALAHWLTTGLPLVAAAPLLGLLLNLPAPAYPWLIASLALGTPALSAIGTFGAALTVGIKRGGLLLS
LLVLPLYVPTLIFGALAATRGAQGLDATTPLILTAGITLGACAVLPFAAAAALRVNLR

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG2386

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmB/CycW/HelB family [H]

Homologues:

Organism=Escherichia coli, GI1788528, Length=215, Percent_Identity=41.3953488372093, Blast_Score=117, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003544 [H]

Pfam domain/function: PF03379 CcmB [H]

EC number: NA

Molecular weight: Translated: 22174; Mature: 22174

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGLLKRDLALALRAGGGFGLSLAFFLIFTALVPFGIGPDSARLSEIAAGLLWLGALLAC
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LLSLDRIFQLDWEDGTLDLIATSPLPLEAAAALKALAHWLTTGLPLVAAAPLLGLLLNLP
HHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
APAYPWLIASLALGTPALSAIGTFGAALTVGIKRGGLLLSLLVLPLYVPTLIFGALAATR
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
GAQGLDATTPLILTAGITLGACAVLPFAAAAALRVNLR
CCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIGLLKRDLALALRAGGGFGLSLAFFLIFTALVPFGIGPDSARLSEIAAGLLWLGALLAC
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LLSLDRIFQLDWEDGTLDLIATSPLPLEAAAALKALAHWLTTGLPLVAAAPLLGLLLNLP
HHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
APAYPWLIASLALGTPALSAIGTFGAALTVGIKRGGLLLSLLVLPLYVPTLIFGALAATR
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
GAQGLDATTPLILTAGITLGACAVLPFAAAAALRVNLR
CCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9043133 [H]