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The map label for this gene is ocd2 [H]

Identifier: 89055096

GI number: 89055096

Start: 2620872

End: 2621837

Strand: Direct

Name: ocd2 [H]

Synonym: Jann_2605

Alternate gene names: 89055096

Gene position: 2620872-2621837 (Clockwise)

Preceding gene: 89055095

Following gene: 89055100

Centisome position: 60.7

GC content: 63.46

Gene sequence:

>966_bases
ATGTATATCGTGCCCGAGCGCGCAATTGCGGACCTGATGACGCGGGAGGCCGCGTTCGATGCGGTTGAAAAGGTATTTGC
CGCCATGGCCGCAGGCGACGCCTATAACTTTCCCGTCGTGCGCGAGGCCATCGGCCACGAAGACGCGCTTTACGGCTTCA
AGGGCGGGTTCGATCAGGCTGGTCTGACGCTGGGGCTAAAGGCGGGGGGCTACTGGCCCAACAACCTTGAGAAGCGTGAC
TTGATCAACCACCAGTCGACGGTGTTTCTGTTTGACCCCGATACCGGCAAAGCCAAAGCCATGGTTGGCGGCAACCTGTT
GACCGCCCTGCGCACGGCGGCGGCGTCCAGCGTCTCTATCAAGCACCTGGCGCGCGACGACGCGAAAGTTATCGGCATGA
TTGGCGCGGGCCACCAAGCCACGTTCCAGTTGCGCGCGGCACTGGAGCAGCGGACCTTCGAAAAGGTCATTGGCTGGAAC
TACCACCCCGATATGCTGCCCAACATCGAGAAGGTCGCGACTGAGGCGGGCGTGCCGTTTGAGGCGGTCGACCTGCCGGG
CATGGCTGAGGCGGATGTGATCATCTCCATCACGTCGGCCTTCGCGCCTTCGCTGATGGCGGACCATGTCGCGCCGGGCA
CACACATCGCCTGCATGGGCACCGACACCAAGGGCAAGCAGGAGGTCGAGGCCGCGCTTCTGGCGCGCGCGACGGTGTTC
ACCGATGAGGTGGCGCAGTCCGTCTCCATCGGCGAAGCGCAGCATGCCGTCGCCGATGGCTTGATCGCGGAGGGCGACGT
CCATCAACTCGGCGCAGTGATCAATGGCACCCATGCGGGCCGCGCCTCCGCCGACGAGATCACGCTGTTTGACGGGACGG
GCGTTGGCTTGCAGGACCTGGCCGTTGCGGCATCAGTCGTCGATCTGGCGATTAAAAAAGGCGTGGCGATTGAGGTCGAC
TTCTAG

Upstream 100 bases:

>100_bases
ACCGGGGGACTGGTCCCCCGGACCCCCTAGAGGTGTAAAGCCAAGATGAAGGAGCCGCGTTGGAAGGCGCGGCTCTTCTA
CAATCAAACGGAGTGAACCC

Downstream 100 bases:

>100_bases
AGCGCGACAACAGAATACAAGAAGGGGCGTGGGGCCAAACAGCGCCACGCCCCTTTTTCATGTCTTCAGAACGGCCTAGC
TGTCTGATCCCGGAAGGCTG

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MYIVPERAIADLMTREAAFDAVEKVFAAMAAGDAYNFPVVREAIGHEDALYGFKGGFDQAGLTLGLKAGGYWPNNLEKRD
LINHQSTVFLFDPDTGKAKAMVGGNLLTALRTAAASSVSIKHLARDDAKVIGMIGAGHQATFQLRAALEQRTFEKVIGWN
YHPDMLPNIEKVATEAGVPFEAVDLPGMAEADVIISITSAFAPSLMADHVAPGTHIACMGTDTKGKQEVEAALLARATVF
TDEVAQSVSIGEAQHAVADGLIAEGDVHQLGAVINGTHAGRASADEITLFDGTGVGLQDLAVAASVVDLAIKKGVAIEVD
F

Sequences:

>Translated_321_residues
MYIVPERAIADLMTREAAFDAVEKVFAAMAAGDAYNFPVVREAIGHEDALYGFKGGFDQAGLTLGLKAGGYWPNNLEKRD
LINHQSTVFLFDPDTGKAKAMVGGNLLTALRTAAASSVSIKHLARDDAKVIGMIGAGHQATFQLRAALEQRTFEKVIGWN
YHPDMLPNIEKVATEAGVPFEAVDLPGMAEADVIISITSAFAPSLMADHVAPGTHIACMGTDTKGKQEVEAALLARATVF
TDEVAQSVSIGEAQHAVADGLIAEGDVHQLGAVINGTHAGRASADEITLFDGTGVGLQDLAVAASVVDLAIKKGVAIEVD
F
>Mature_321_residues
MYIVPERAIADLMTREAAFDAVEKVFAAMAAGDAYNFPVVREAIGHEDALYGFKGGFDQAGLTLGLKAGGYWPNNLEKRD
LINHQSTVFLFDPDTGKAKAMVGGNLLTALRTAAASSVSIKHLARDDAKVIGMIGAGHQATFQLRAALEQRTFEKVIGWN
YHPDMLPNIEKVATEAGVPFEAVDLPGMAEADVIISITSAFAPSLMADHVAPGTHIACMGTDTKGKQEVEAALLARATVF
TDEVAQSVSIGEAQHAVADGLIAEGDVHQLGAVINGTHAGRASADEITLFDGTGVGLQDLAVAASVVDLAIKKGVAIEVD
F

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI62241008, Length=229, Percent_Identity=31.8777292576419, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI4503065, Length=229, Percent_Identity=31.8777292576419, Blast_Score=101, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 33684; Mature: 33684

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIVPERAIADLMTREAAFDAVEKVFAAMAAGDAYNFPVVREAIGHEDALYGFKGGFDQA
CEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHCCCCCCCCCCC
GLTLGLKAGGYWPNNLEKRDLINHQSTVFLFDPDTGKAKAMVGGNLLTALRTAAASSVSI
CEEEEEECCCCCCCCCCHHHHCCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHCCHHH
KHLARDDAKVIGMIGAGHQATFQLRAALEQRTFEKVIGWNYHPDMLPNIEKVATEAGVPF
HHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCE
EAVDLPGMAEADVIISITSAFAPSLMADHVAPGTHIACMGTDTKGKQEVEAALLARATVF
EEECCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
TDEVAQSVSIGEAQHAVADGLIAEGDVHQLGAVINGTHAGRASADEITLFDGTGVGLQDL
HHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHH
AVAASVVDLAIKKGVAIEVDF
HHHHHHHHHHHHCCEEEEECC
>Mature Secondary Structure
MYIVPERAIADLMTREAAFDAVEKVFAAMAAGDAYNFPVVREAIGHEDALYGFKGGFDQA
CEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHCCCCCCCCCCC
GLTLGLKAGGYWPNNLEKRDLINHQSTVFLFDPDTGKAKAMVGGNLLTALRTAAASSVSI
CEEEEEECCCCCCCCCCHHHHCCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHCCHHH
KHLARDDAKVIGMIGAGHQATFQLRAALEQRTFEKVIGWNYHPDMLPNIEKVATEAGVPF
HHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCE
EAVDLPGMAEADVIISITSAFAPSLMADHVAPGTHIACMGTDTKGKQEVEAALLARATVF
EEECCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
TDEVAQSVSIGEAQHAVADGLIAEGDVHQLGAVINGTHAGRASADEITLFDGTGVGLQDL
HHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHH
AVAASVVDLAIKKGVAIEVDF
HHHHHHHHHHHHCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]