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The map label for this gene is 89055040

Identifier: 89055040

GI number: 89055040

Start: 2551914

End: 2553002

Strand: Reverse

Name: 89055040

Synonym: Jann_2549

Alternate gene names: NA

Gene position: 2553002-2551914 (Counterclockwise)

Preceding gene: 89055045

Following gene: 89055036

Centisome position: 59.12

GC content: 64.74

Gene sequence:

>1089_bases
ATGTTCTACACTCATCCCATGAATGTGAAGCCTCCACCCACACCCGGGCGCGGCGTGCGCAGCAACGCGTCGGGGCGGTT
TGAGACCTTTGACCGGGAGGCCGTGGATGATGGCTGGGATCTTATGGAAGATGTGCCGGCAGTCCGCACCGACGTGACCG
AGGAGGTCGCGCGCAGCGTGATCAGCCGCAACACGTCGCCGGACATTTCCTTTGACCGGTCGATCAATCCCTACCGGGGG
TGCGAACATGGTTGTGTTTACTGCTTCGCGCGGCCGTCCCATGCGTATCTGGGTCTGTCGCCGGGCCTGGACTTTGAGAC
CAAACTGATCGCGCGGCCCAATGCGGCAGAGGTGCTGGAGACGGAGTTGCGCCGCCCGTCCTACCGCTGCGACGTGATCG
CGATTGGCACCAACACCGATGCCTACCAGCCGATTGAGCGGGACCGCCGCATCATGCGCGATGTGCTGGAGGTGCTGCAG
AGGTTCCGGCACCCCGTGGGGATAGCGACCAAGGGTGTCCTGATCGAACGCGATACGGATATCCTGGGAGAGATGGGGCA
GGCGGGGTTGGCGCGGGTCGGGATTTCGGTGACGACCCTTCAGGCCGATCTGTCCCGCAAAATGGAGCCCCGCGTCCCGT
CGCCCGCGCGGCGGTTGCGCGCGATTGAGGTGTTGAGCAAAGCCGGGGTGCCGGTGCGGGTGATGGTCTCTCCCATGGTG
CCGGGCCTGACGGATCACGAGTTGGAGGCGATCGTCGACGCCGCCCGCGATGCCGGTGCCGTGGCTGCCAGCATGATCCC
GATCCGTCTGCCGCGAGAGGTGGCCGACCTGTGGCAGGACTGGCTGGCGGAACATTACCCCGACCGGATGGCGCGTGTGA
TGTCCAAGCTGCGCGACATGCATGGGGGCAAGCCTTATGAGGCTGAATTCGGCAAACGCATGCGGGGGGAAGGGATTTGG
GCTGACCTGTTGCAGCAGCGCTTCAAACGCGCCGTGCGCGCGGCCGGACTGGCAACTCGCTTGCCCCCACTGCGCCGGGA
TCTGTTCGAAGTGCCTTTGGCGACCGGCGATCAGATGGCGTTGTTTTGA

Upstream 100 bases:

>100_bases
CCGGTGTTTTTTCAAGTATCTAAAGAAATCGCCTTCCGGTTGACGGCTGTTTGCGACATGGAGCGTCGGCTGTGCGACTT
CGATTGTGAATGTTCTTCAA

Downstream 100 bases:

>100_bases
TGCGTCATAGAGAGTTTTGCAAAACTCTCTCCACGCCCTTGCAAGGGCGTGCTGCAAAGCCTTGCAAGGCTTTGCCCAGA
CTTTTGCAAAAGTCTGGGCC

Product: radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MFYTHPMNVKPPPTPGRGVRSNASGRFETFDREAVDDGWDLMEDVPAVRTDVTEEVARSVISRNTSPDISFDRSINPYRG
CEHGCVYCFARPSHAYLGLSPGLDFETKLIARPNAAEVLETELRRPSYRCDVIAIGTNTDAYQPIERDRRIMRDVLEVLQ
RFRHPVGIATKGVLIERDTDILGEMGQAGLARVGISVTTLQADLSRKMEPRVPSPARRLRAIEVLSKAGVPVRVMVSPMV
PGLTDHELEAIVDAARDAGAVAASMIPIRLPREVADLWQDWLAEHYPDRMARVMSKLRDMHGGKPYEAEFGKRMRGEGIW
ADLLQQRFKRAVRAAGLATRLPPLRRDLFEVPLATGDQMALF

Sequences:

>Translated_362_residues
MFYTHPMNVKPPPTPGRGVRSNASGRFETFDREAVDDGWDLMEDVPAVRTDVTEEVARSVISRNTSPDISFDRSINPYRG
CEHGCVYCFARPSHAYLGLSPGLDFETKLIARPNAAEVLETELRRPSYRCDVIAIGTNTDAYQPIERDRRIMRDVLEVLQ
RFRHPVGIATKGVLIERDTDILGEMGQAGLARVGISVTTLQADLSRKMEPRVPSPARRLRAIEVLSKAGVPVRVMVSPMV
PGLTDHELEAIVDAARDAGAVAASMIPIRLPREVADLWQDWLAEHYPDRMARVMSKLRDMHGGKPYEAEFGKRMRGEGIW
ADLLQQRFKRAVRAAGLATRLPPLRRDLFEVPLATGDQMALF
>Mature_362_residues
MFYTHPMNVKPPPTPGRGVRSNASGRFETFDREAVDDGWDLMEDVPAVRTDVTEEVARSVISRNTSPDISFDRSINPYRG
CEHGCVYCFARPSHAYLGLSPGLDFETKLIARPNAAEVLETELRRPSYRCDVIAIGTNTDAYQPIERDRRIMRDVLEVLQ
RFRHPVGIATKGVLIERDTDILGEMGQAGLARVGISVTTLQADLSRKMEPRVPSPARRLRAIEVLSKAGVPVRVMVSPMV
PGLTDHELEAIVDAARDAGAVAASMIPIRLPREVADLWQDWLAEHYPDRMARVMSKLRDMHGGKPYEAEFGKRMRGEGIW
ADLLQQRFKRAVRAAGLATRLPPLRRDLFEVPLATGDQMALF

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 40510; Mature: 40510

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYTHPMNVKPPPTPGRGVRSNASGRFETFDREAVDDGWDLMEDVPAVRTDVTEEVARSV
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHCCHHHHHHHCHHHHHHHHHHHHHHH
ISRNTSPDISFDRSINPYRGCEHGCVYCFARPSHAYLGLSPGLDFETKLIARPNAAEVLE
HHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCEEEEECCCHHHHHH
TELRRPSYRCDVIAIGTNTDAYQPIERDRRIMRDVLEVLQRFRHPVGIATKGVLIERDTD
HHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHH
ILGEMGQAGLARVGISVTTLQADLSRKMEPRVPSPARRLRAIEVLSKAGVPVRVMVSPMV
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
PGLTDHELEAIVDAARDAGAVAASMIPIRLPREVADLWQDWLAEHYPDRMARVMSKLRDM
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
HGGKPYEAEFGKRMRGEGIWADLLQQRFKRAVRAAGLATRLPPLRRDLFEVPLATGDQMA
CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC
LF
CC
>Mature Secondary Structure
MFYTHPMNVKPPPTPGRGVRSNASGRFETFDREAVDDGWDLMEDVPAVRTDVTEEVARSV
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHCCHHHHHHHCHHHHHHHHHHHHHHH
ISRNTSPDISFDRSINPYRGCEHGCVYCFARPSHAYLGLSPGLDFETKLIARPNAAEVLE
HHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCEEEEECCCHHHHHH
TELRRPSYRCDVIAIGTNTDAYQPIERDRRIMRDVLEVLQRFRHPVGIATKGVLIERDTD
HHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHH
ILGEMGQAGLARVGISVTTLQADLSRKMEPRVPSPARRLRAIEVLSKAGVPVRVMVSPMV
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
PGLTDHELEAIVDAARDAGAVAASMIPIRLPREVADLWQDWLAEHYPDRMARVMSKLRDM
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
HGGKPYEAEFGKRMRGEGIWADLLQQRFKRAVRAAGLATRLPPLRRDLFEVPLATGDQMA
CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC
LF
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]