Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89055045

Identifier: 89055045

GI number: 89055045

Start: 2555553

End: 2556065

Strand: Reverse

Name: 89055045

Synonym: Jann_2554

Alternate gene names: NA

Gene position: 2556065-2555553 (Counterclockwise)

Preceding gene: 89055047

Following gene: 89055040

Centisome position: 59.2

GC content: 66.47

Gene sequence:

>513_bases
ATGGCCGCTACCACAACCAACACCTCATCCTCCGCCGCGCTGCCCGCGATCACCCTCAATACCGTTGCGCTGATCCTTCT
GTCCGGCGCCGTGGGCACACTCGCCTTTGACCTCTGGGGTCAGGCAATCGCCCCGCTTCTGGGCCTTGGAAGCCTTGCGC
CGGTGGGCCTCGCCCGCGGTTTTCTCGGCACGCTCGGCCTGCCCAACTCCGCCGCCTGGGGCCATGTCATGCACCTCTTT
CTGGTGGGCGTGATCGCTTATCCGGTGGGTTGGCTGTTCGTGGCCCGGCCGATCTTTGCCAAGGTGGTGCCCGGTCTGCA
TTGGACCGTCGCCTCCGCCCTCTACGGCGTGGCGCTGTGGGTCTTTGCCATCGGCTTCATCGCCTGGGTCGCAGGCAACC
CGGCCTTTCTGGGGTTTGCGCGGATCACCTGGGTCGCCTTGGCGGGCCACATCTTCTACGCCATCGCCGCCGCCGCGACG
GTCCAGTATCTGGATCGGCTGCGCACAGCGTAA

Upstream 100 bases:

>100_bases
GACCCGTCACTTGAGCGGAGGTCGGATCCCCGCGAGGGTCACCCCGGTCAAGACACGACACAACCTCACATCCGACACCA
CATATAAGGGACCCGACCCC

Downstream 100 bases:

>100_bases
ACCAAGACCAACAGCTTTATGCCCAAGCGGGTCGTCCCCTCAGGACGGCCCGTCTTTTTTGCGGAAGACAACCGAGTAGA
CAACCAAGGCCAGCGCGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MAATTTNTSSSAALPAITLNTVALILLSGAVGTLAFDLWGQAIAPLLGLGSLAPVGLARGFLGTLGLPNSAAWGHVMHLF
LVGVIAYPVGWLFVARPIFAKVVPGLHWTVASALYGVALWVFAIGFIAWVAGNPAFLGFARITWVALAGHIFYAIAAAAT
VQYLDRLRTA

Sequences:

>Translated_170_residues
MAATTTNTSSSAALPAITLNTVALILLSGAVGTLAFDLWGQAIAPLLGLGSLAPVGLARGFLGTLGLPNSAAWGHVMHLF
LVGVIAYPVGWLFVARPIFAKVVPGLHWTVASALYGVALWVFAIGFIAWVAGNPAFLGFARITWVALAGHIFYAIAAAAT
VQYLDRLRTA
>Mature_169_residues
AATTTNTSSSAALPAITLNTVALILLSGAVGTLAFDLWGQAIAPLLGLGSLAPVGLARGFLGTLGLPNSAAWGHVMHLFL
VGVIAYPVGWLFVARPIFAKVVPGLHWTVASALYGVALWVFAIGFIAWVAGNPAFLGFARITWVALAGHIFYAIAAAATV
QYLDRLRTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17628; Mature: 17497

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAATTTNTSSSAALPAITLNTVALILLSGAVGTLAFDLWGQAIAPLLGLGSLAPVGLARG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
FLGTLGLPNSAAWGHVMHLFLVGVIAYPVGWLFVARPIFAKVVPGLHWTVASALYGVALW
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VFAIGFIAWVAGNPAFLGFARITWVALAGHIFYAIAAAATVQYLDRLRTA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AATTTNTSSSAALPAITLNTVALILLSGAVGTLAFDLWGQAIAPLLGLGSLAPVGLARG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
FLGTLGLPNSAAWGHVMHLFLVGVIAYPVGWLFVARPIFAKVVPGLHWTVASALYGVALW
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VFAIGFIAWVAGNPAFLGFARITWVALAGHIFYAIAAAATVQYLDRLRTA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA