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The map label for this gene is ybdL [C]

Identifier: 89055028

GI number: 89055028

Start: 2538548

End: 2539693

Strand: Reverse

Name: ybdL [C]

Synonym: Jann_2537

Alternate gene names: 89055028

Gene position: 2539693-2538548 (Counterclockwise)

Preceding gene: 89055030

Following gene: 89055027

Centisome position: 58.82

GC content: 65.18

Gene sequence:

>1146_bases
ATGCGCCAATCGACCCGATCCCACGTGGACCCGTTCATCGTCATGGATGTGATGGAGCAGGCGCGCGCGGCGGAAGACGC
CGGGCGTCACATCATCCATATGGAAGTGGGCCAGCCGGGCACAGGCGCGCCCAAAGCCGCACGGGACCGCTTGGCCGATG
CGATGGCGGCGGGGCCCCTGGGCTACACCGTTGCCCTGGGCCGCCCGGATCTGCGCGACGGCATCGCGGCGCTTTATGGT
GAATGGTACGGCGTGGATCTGGACCCGGCCCGGGTTGTGCTGACAGCGGGCGCGTCGGGCGCCTTCATCCTGGCCTTCAC
GGCGCTCTTTGATGCAGGCGCGCGCGTGGCATTGGGGGAGCCGTGCTATCCCTCCTATCGCCAGATCCTCACGGCCCTGT
CCCTGACCCCCGTTGGCCTGCAAACCCATGCCGAGACGCGGTTCCAGCCAACGCCGGATCATCTGGATGCCAGCCTCGAC
GGATTGATCGTTGCGAGCCCTGCCAACCCAACGGGGACGATGTTGTTCCGCCCGGAGCTGGACGCCTTGGCAACCACATG
CACGTCGCACGGTATTTCATTGATTTCAGACGAGATCTACCATGGCCTTCAATATGTGGGTCGGGCCGTCAGCGCGCTGG
AAGTGACCGATGATGTTTATGTGATCAACTCCTTCTCCAAGTACTTCTCCATGACCGGATGGCGGCTGGGGTGGATGGTC
GTCCCGCCTGATCACGTCCGCACCATCGAACGTCTGGCCCAGAACATGTTCATCTGCCCGTCTCACGCGGCCCAGGTTGC
GGCGCTAGGGGCGCTGTCACCTGAGGGCCGCGCCGAGTTGGACCAGCACCGCGCCGTCTACGCGCGCAATCGCGAGATTC
TGCAAACGGGCCTGTGCGCGGCGGGGCTGACCAACACCGCGCCCGCTGACGGGGCGTTTTATGTCTATGTCGATATCAGC
CACCTGACCGACGATGCCCGGGCGTTTGCGGCGCGCATCCTTGATGAGGCGGGCGTCGCTGTGACCCCGGGCCTCGATTT
CGACAAGACGCGTGGGGCAGGGACCCTGCGCCTCAGCTACGCCCGCGCAACCGACGATATTGAGGAGGGCGTCGCGCGCC
TGATGACGTTCCTCAACGCCCTCTAG

Upstream 100 bases:

>100_bases
AATCGCTCTTGCCCCCGTCTATCACATCCCGCGCCCGCCGCCATTGACGAATGCGCGCGTCAATGGTCTCACACTTTCGT
GACTTCCTGAGGGGAACCCC

Downstream 100 bases:

>100_bases
GCCCGCCCGTCCCGATCCGCTAACCTGCGCGCAACCAATCAGAGGGAAGCAGCCCCCCCGTGTTTCGAGCCGTCCTGATC
ATCGCCCTCCTGTGGTTTGG

Product: aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MRQSTRSHVDPFIVMDVMEQARAAEDAGRHIIHMEVGQPGTGAPKAARDRLADAMAAGPLGYTVALGRPDLRDGIAALYG
EWYGVDLDPARVVLTAGASGAFILAFTALFDAGARVALGEPCYPSYRQILTALSLTPVGLQTHAETRFQPTPDHLDASLD
GLIVASPANPTGTMLFRPELDALATTCTSHGISLISDEIYHGLQYVGRAVSALEVTDDVYVINSFSKYFSMTGWRLGWMV
VPPDHVRTIERLAQNMFICPSHAAQVAALGALSPEGRAELDQHRAVYARNREILQTGLCAAGLTNTAPADGAFYVYVDIS
HLTDDARAFAARILDEAGVAVTPGLDFDKTRGAGTLRLSYARATDDIEEGVARLMTFLNAL

Sequences:

>Translated_381_residues
MRQSTRSHVDPFIVMDVMEQARAAEDAGRHIIHMEVGQPGTGAPKAARDRLADAMAAGPLGYTVALGRPDLRDGIAALYG
EWYGVDLDPARVVLTAGASGAFILAFTALFDAGARVALGEPCYPSYRQILTALSLTPVGLQTHAETRFQPTPDHLDASLD
GLIVASPANPTGTMLFRPELDALATTCTSHGISLISDEIYHGLQYVGRAVSALEVTDDVYVINSFSKYFSMTGWRLGWMV
VPPDHVRTIERLAQNMFICPSHAAQVAALGALSPEGRAELDQHRAVYARNREILQTGLCAAGLTNTAPADGAFYVYVDIS
HLTDDARAFAARILDEAGVAVTPGLDFDKTRGAGTLRLSYARATDDIEEGVARLMTFLNAL
>Mature_381_residues
MRQSTRSHVDPFIVMDVMEQARAAEDAGRHIIHMEVGQPGTGAPKAARDRLADAMAAGPLGYTVALGRPDLRDGIAALYG
EWYGVDLDPARVVLTAGASGAFILAFTALFDAGARVALGEPCYPSYRQILTALSLTPVGLQTHAETRFQPTPDHLDASLD
GLIVASPANPTGTMLFRPELDALATTCTSHGISLISDEIYHGLQYVGRAVSALEVTDDVYVINSFSKYFSMTGWRLGWMV
VPPDHVRTIERLAQNMFICPSHAAQVAALGALSPEGRAELDQHRAVYARNREILQTGLCAAGLTNTAPADGAFYVYVDIS
HLTDDARAFAARILDEAGVAVTPGLDFDKTRGAGTLRLSYARATDDIEEGVARLMTFLNAL

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=318, Percent_Identity=27.6729559748428, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI169881279, Length=318, Percent_Identity=27.6729559748428, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI56713256, Length=321, Percent_Identity=24.9221183800623, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI56713254, Length=321, Percent_Identity=24.9221183800623, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI169881281, Length=249, Percent_Identity=26.5060240963855, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI1786816, Length=360, Percent_Identity=27.5, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1788722, Length=393, Percent_Identity=25.6997455470738, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI1788627, Length=392, Percent_Identity=23.469387755102, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787710, Length=220, Percent_Identity=28.6363636363636, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1790797, Length=343, Percent_Identity=24.4897959183673, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71994472, Length=389, Percent_Identity=25.9640102827763, Blast_Score=102, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI71994476, Length=389, Percent_Identity=25.9640102827763, Blast_Score=102, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17567369, Length=307, Percent_Identity=25.0814332247557, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17567663, Length=377, Percent_Identity=23.342175066313, Blast_Score=82, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6322401, Length=387, Percent_Identity=23.7726098191214, Blast_Score=100, Evalue=4e-22,
Organism=Drosophila melanogaster, GI28573069, Length=390, Percent_Identity=24.6153846153846, Blast_Score=95, Evalue=8e-20,
Organism=Drosophila melanogaster, GI24646114, Length=390, Percent_Identity=24.6153846153846, Blast_Score=95, Evalue=8e-20,
Organism=Drosophila melanogaster, GI28573067, Length=390, Percent_Identity=24.6153846153846, Blast_Score=95, Evalue=8e-20,
Organism=Drosophila melanogaster, GI28573065, Length=390, Percent_Identity=24.6153846153846, Blast_Score=95, Evalue=8e-20,
Organism=Drosophila melanogaster, GI18859735, Length=390, Percent_Identity=23.3333333333333, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 40860; Mature: 40860

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS00105 AA_TRANSFER_CLASS_1 ; PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQSTRSHVDPFIVMDVMEQARAAEDAGRHIIHMEVGQPGTGAPKAARDRLADAMAAGPL
CCCCCCHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCC
GYTVALGRPDLRDGIAALYGEWYGVDLDPARVVLTAGASGAFILAFTALFDAGARVALGE
CEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEECC
PCYPSYRQILTALSLTPVGLQTHAETRFQPTPDHLDASLDGLIVASPANPTGTMLFRPEL
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEEEECCCH
DALATTCTSHGISLISDEIYHGLQYVGRAVSALEVTDDVYVINSFSKYFSMTGWRLGWMV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEHHHHHHHHCCCCEEEEEE
VPPDHVRTIERLAQNMFICPSHAAQVAALGALSPEGRAELDQHRAVYARNREILQTGLCA
ECCHHHHHHHHHHHCEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
AGLTNTAPADGAFYVYVDISHLTDDARAFAARILDEAGVAVTPGLDFDKTRGAGTLRLSY
CCCCCCCCCCCEEEEEEEHHHCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEE
ARATDDIEEGVARLMTFLNAL
HHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRQSTRSHVDPFIVMDVMEQARAAEDAGRHIIHMEVGQPGTGAPKAARDRLADAMAAGPL
CCCCCCHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCC
GYTVALGRPDLRDGIAALYGEWYGVDLDPARVVLTAGASGAFILAFTALFDAGARVALGE
CEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEECC
PCYPSYRQILTALSLTPVGLQTHAETRFQPTPDHLDASLDGLIVASPANPTGTMLFRPEL
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEEEECCCH
DALATTCTSHGISLISDEIYHGLQYVGRAVSALEVTDDVYVINSFSKYFSMTGWRLGWMV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEHHHHHHHHCCCCEEEEEE
VPPDHVRTIERLAQNMFICPSHAAQVAALGALSPEGRAELDQHRAVYARNREILQTGLCA
ECCHHHHHHHHHHHCEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
AGLTNTAPADGAFYVYVDISHLTDDARAFAARILDEAGVAVTPGLDFDKTRGAGTLRLSY
CCCCCCCCCCCEEEEEEEHHHCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEE
ARATDDIEEGVARLMTFLNAL
HHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]