| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is yqjF [C]
Identifier: 89054988
GI number: 89054988
Start: 2495910
End: 2496278
Strand: Direct
Name: yqjF [C]
Synonym: Jann_2497
Alternate gene names: 89054988
Gene position: 2495910-2496278 (Clockwise)
Preceding gene: 89054987
Following gene: 89054989
Centisome position: 57.8
GC content: 66.67
Gene sequence:
>369_bases ATGAGCGACGCGCTCGCCCTGGTGGGTCGCCTGCTTCTGGCGTCTCTCATGCTGGCTGGCACGTTGCAGAAAATCGCTGA CCCCGCGGGTGCGGGCGCGCTTCTGGCCCTCGCGGAACTCCCCCTCTGGCCGCTCTGGCCCGCTGGCCTTTTCACCGCCA TCGCAGGCCTTGGCCTCGCCCTGGGTGTGCAAACCCGCCCCCTGGCCATCGTCGCTGCCGGATACTGCATCGTCACCAGC TATTTCCACATCCTCATGGACGACCCCTGGCAGATGACCATCGCCTTCAAGAACTGGACCATTGCGGGCGGCTATCTGAT GCTCGCGGCCCATGGCCCAGGGCGCTATGCCCTTCGCCCCGCCACGTGA
Upstream 100 bases:
>100_bases ATCAGGCCCGCATGATCGAGATGCAGGAACGTCAACTGGCCGTCGCCGAGCGCCAGGCCACAGCACAAGAGCGGATCGCC ACGGCGCTAGAACGCCGCCC
Downstream 100 bases:
>100_bases GTCGGGGTCCGGGTCAAGGATGCGCAGCACCGCGCTATGCGCGGCGCCAAAGGCGTCCTTGAGGCGGATCGCGACTCGCA CTCCAACCTTGTACGGGCCT
Product: DoxX
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 122; Mature: 121
Protein sequence:
>122_residues MSDALALVGRLLLASLMLAGTLQKIADPAGAGALLALAELPLWPLWPAGLFTAIAGLGLALGVQTRPLAIVAAGYCIVTS YFHILMDDPWQMTIAFKNWTIAGGYLMLAAHGPGRYALRPAT
Sequences:
>Translated_122_residues MSDALALVGRLLLASLMLAGTLQKIADPAGAGALLALAELPLWPLWPAGLFTAIAGLGLALGVQTRPLAIVAAGYCIVTS YFHILMDDPWQMTIAFKNWTIAGGYLMLAAHGPGRYALRPAT >Mature_121_residues SDALALVGRLLLASLMLAGTLQKIADPAGAGALLALAELPLWPLWPAGLFTAIAGLGLALGVQTRPLAIVAAGYCIVTSY FHILMDDPWQMTIAFKNWTIAGGYLMLAAHGPGRYALRPAT
Specific function: Unknown
COG id: COG2259
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12773; Mature: 12642
Theoretical pI: Translated: 8.48; Mature: 8.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDALALVGRLLLASLMLAGTLQKIADPAGAGALLALAELPLWPLWPAGLFTAIAGLGLA CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH LGVQTRPLAIVAAGYCIVTSYFHILMDDPWQMTIAFKNWTIAGGYLMLAAHGPGRYALRP CCCCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEEEEECEEEECCEEEEEECCCCCEEECC AT CC >Mature Secondary Structure SDALALVGRLLLASLMLAGTLQKIADPAGAGALLALAELPLWPLWPAGLFTAIAGLGLA CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH LGVQTRPLAIVAAGYCIVTSYFHILMDDPWQMTIAFKNWTIAGGYLMLAAHGPGRYALRP CCCCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEEEEECEEEECCEEEEEECCCCCEEECC AT CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA