| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89054933
Identifier: 89054933
GI number: 89054933
Start: 2433857
End: 2434585
Strand: Direct
Name: 89054933
Synonym: Jann_2442
Alternate gene names: NA
Gene position: 2433857-2434585 (Clockwise)
Preceding gene: 89054929
Following gene: 89054935
Centisome position: 56.37
GC content: 66.8
Gene sequence:
>729_bases ATGGATACCACACAGGACATGACCCGGACGCGCGCCAGTCTGGACGGTCGGATCACCAGCGTCCTGCGGTACTGGGATGA TCTGCGTGGCGACCGTGTTGCGCCGGGGCGCATTGAGATCAGCCCCGCCGCCATCAGCCGCCATCTGTCGCGCATCTGCA TTCTGGAGCGCCCCCGCGCCGGAACCGTGCGTCTGCGCTTGGCCGGAGCGACCGTGTCCAGCCGGGCTGGTATGGAATTG CGCGGGATGCCGTTTCGCTCGCTCTTCGCGCTGGATGACCGCAACACCGCCATGGATGCGGCGGAAACCGCGATCACCAC GCCCGCCGTCACCTTCCTGTCCCTTGGCCGCCAGGAGCGGACCGGAACGATGCCCGAGGCCACGATGGCAATCCTGCCCC TGACCGACACCCGCGGCGCTTTGACCCGCGCCATGGCAATATATGCGGAGCGCGCGTCAATCACGCCCTTCGTGTCGGAC GTGCGCGGGCGGTTTGTTGTCACCGACAGCTGGTCGTTGGATATCCCGGAAACCGGCCCGATTGTGGGCCCGATGGGCAA TGTCACGCCAGGGTTCAACGGCGCGGTCGCAGGCGCGCCGATCAAGCCGATCTCCACCCGTGTCTTGCGGCCGCGTCTGG CCACGCAAACCGAGGCGAGCGTCGTGCCCCAGACGCTTCCGCACCACACGCGCCCAGTCTTTCAGGTCATTGACGGCGGG CTGGATTAA
Upstream 100 bases:
>100_bases CAGCCCGGGATAAAGCGGGGCCGCGCAAACCGCCAGGACCGTGTCGGTTCGACAAAACCAGCGCCGCCGACGCAACCGAA ACCCGATGGAGTGACGTCAG
Downstream 100 bases:
>100_bases TCCACCCGTCGATATTTCTTCGAGATAACAATATTTTATGATGGTCTTGCGCGCGCCGTTTATTGCAACGGCGCGCGCAT TTACGTCTACGCTGTAGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 242; Mature: 242
Protein sequence:
>242_residues MDTTQDMTRTRASLDGRITSVLRYWDDLRGDRVAPGRIEISPAAISRHLSRICILERPRAGTVRLRLAGATVSSRAGMEL RGMPFRSLFALDDRNTAMDAAETAITTPAVTFLSLGRQERTGTMPEATMAILPLTDTRGALTRAMAIYAERASITPFVSD VRGRFVVTDSWSLDIPETGPIVGPMGNVTPGFNGAVAGAPIKPISTRVLRPRLATQTEASVVPQTLPHHTRPVFQVIDGG LD
Sequences:
>Translated_242_residues MDTTQDMTRTRASLDGRITSVLRYWDDLRGDRVAPGRIEISPAAISRHLSRICILERPRAGTVRLRLAGATVSSRAGMEL RGMPFRSLFALDDRNTAMDAAETAITTPAVTFLSLGRQERTGTMPEATMAILPLTDTRGALTRAMAIYAERASITPFVSD VRGRFVVTDSWSLDIPETGPIVGPMGNVTPGFNGAVAGAPIKPISTRVLRPRLATQTEASVVPQTLPHHTRPVFQVIDGG LD >Mature_242_residues MDTTQDMTRTRASLDGRITSVLRYWDDLRGDRVAPGRIEISPAAISRHLSRICILERPRAGTVRLRLAGATVSSRAGMEL RGMPFRSLFALDDRNTAMDAAETAITTPAVTFLSLGRQERTGTMPEATMAILPLTDTRGALTRAMAIYAERASITPFVSD VRGRFVVTDSWSLDIPETGPIVGPMGNVTPGFNGAVAGAPIKPISTRVLRPRLATQTEASVVPQTLPHHTRPVFQVIDGG LD
Specific function: Unknown
COG id: COG5388
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26177; Mature: 26177
Theoretical pI: Translated: 10.92; Mature: 10.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTTQDMTRTRASLDGRITSVLRYWDDLRGDRVAPGRIEISPAAISRHLSRICILERPRA CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHEEECCCC GTVRLRLAGATVSSRAGMELRGMPFRSLFALDDRNTAMDAAETAITTPAVTFLSLGRQER CEEEEEEECCCCCCCCCCEECCCCHHHEEEECCCCCHHHHHHHHHCCHHHHHHHCCCHHC TGTMPEATMAILPLTDTRGALTRAMAIYAERASITPFVSDVRGRFVVTDSWSLDIPETGP CCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCCCCCCCC IVGPMGNVTPGFNGAVAGAPIKPISTRVLRPRLATQTEASVVPQTLPHHTRPVFQVIDGG CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHCCCHHHHCCCCCCCCCCHHHHHHCCC LD CC >Mature Secondary Structure MDTTQDMTRTRASLDGRITSVLRYWDDLRGDRVAPGRIEISPAAISRHLSRICILERPRA CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHEEECCCC GTVRLRLAGATVSSRAGMELRGMPFRSLFALDDRNTAMDAAETAITTPAVTFLSLGRQER CEEEEEEECCCCCCCCCCEECCCCHHHEEEECCCCCHHHHHHHHHCCHHHHHHHCCCHHC TGTMPEATMAILPLTDTRGALTRAMAIYAERASITPFVSDVRGRFVVTDSWSLDIPETGP CCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCCCCCCCC IVGPMGNVTPGFNGAVAGAPIKPISTRVLRPRLATQTEASVVPQTLPHHTRPVFQVIDGG CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHCCCHHHHCCCCCCCCCCHHHHHHCCC LD CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA