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The map label for this gene is glxA [H]

Identifier: 89054935

GI number: 89054935

Start: 2436242

End: 2437237

Strand: Direct

Name: glxA [H]

Synonym: Jann_2444

Alternate gene names: 89054935

Gene position: 2436242-2437237 (Clockwise)

Preceding gene: 89054933

Following gene: 89054938

Centisome position: 56.42

GC content: 62.45

Gene sequence:

>996_bases
ATGTCGGACAAAGCTGCGCGGCTGCGCCCCGGTGAAGGCCCCAAGCAATTCGTCTTCGTCCTGCTGGACCAGTTTACGAT
GCTGTGTTTCGCCTCCGCCGTGGAGGCGCTGCGCATTGCCAACCGCATGTCGGGCCGGGAGTTGTACCGCTGGACCCTGG
CGGGTGAAGGCGGCGACTACGCCCAAAGCTCGGCCGGGATCTGGTTTCGCCTCGACAGCGATCTGAGCGAGGTGACACGC
GACGACGTCGTCTTGCTGTGCGGCGGGATCGACGTGGCAAACGCCACCACCAAACGGCTGCTCAGCTGGGTCCGGCGAGA
GGCGCGCAAAGGCCCCGTCATGGCCGGGCTTTGTACGGCGGGCTATACGCTGGCCAAGGCCGGGCTTCTGGATGGCAAGC
GCGCCACGATCCATTGGGAAAACCAGGACAGCTTCGCGGAAGAGTTTGAAGAGGTCACGCTGACCAAATCGGTCTTTGTC
GTCGATGGGCCGCGCATCACGACCGCCGGGGGCACGGCGTCGATTGACCTGATGCTGAAGTTGATCGCCGAGGATCACGG
CGAGGATCTGGCCAATCTGGTGGCCGATCAGTTGATCTACACGTCGATAAGAACGGATCAGGACACGCAGCGCCTGTCGA
TCCCCACGCGCATCGGCGTGCGCCACCCGAAGCTGGGGCAAGTGATCCGGATGATGGAGCAGAATATCGAAGATCCCATT
AGCCCGGCGCAACTGGCGATGGATGTGGGCATGTCGACCCGGCAGCTGGAACGGCTGTTCCGCCGCTACCTCAACCGCTC
CCCCAAGCGGTATTATATGGAGTTGCGGTTGGGCAAAGCGCGCAATCTGCTGATGCAGACGGATATGAGCGTGATCAACG
TGGCACTGGCCTGCGGATTTGCCTCGCCGTCGCATTTTTCCAAATGCTATCGGGCCCATTACGACACTACACCCTACCGC
GAGCGTGGCAGCCACGCGGCCCGCGCCAAAGTGTGA

Upstream 100 bases:

>100_bases
AACTCGGGATTGCGCGCGCTCAAGTTTAGTGATTTCGCTTTTACTCGCGGTGGGCGTGCCAGCTTTTTGGGCACCCCTGG
AGCCAGGGAGAAACTGCGAC

Downstream 100 bases:

>100_bases
CGGCGCGGCCCCGCTACCCGTCCTTGAACCGCGCCGCCCGCCCCCCGCGTCGCCCGACTGGTGGCTTGGCGTCCAACCCT
TCCGCCAGCACGACCTTCAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MSDKAARLRPGEGPKQFVFVLLDQFTMLCFASAVEALRIANRMSGRELYRWTLAGEGGDYAQSSAGIWFRLDSDLSEVTR
DDVVLLCGGIDVANATTKRLLSWVRREARKGPVMAGLCTAGYTLAKAGLLDGKRATIHWENQDSFAEEFEEVTLTKSVFV
VDGPRITTAGGTASIDLMLKLIAEDHGEDLANLVADQLIYTSIRTDQDTQRLSIPTRIGVRHPKLGQVIRMMEQNIEDPI
SPAQLAMDVGMSTRQLERLFRRYLNRSPKRYYMELRLGKARNLLMQTDMSVINVALACGFASPSHFSKCYRAHYDTTPYR
ERGSHAARAKV

Sequences:

>Translated_331_residues
MSDKAARLRPGEGPKQFVFVLLDQFTMLCFASAVEALRIANRMSGRELYRWTLAGEGGDYAQSSAGIWFRLDSDLSEVTR
DDVVLLCGGIDVANATTKRLLSWVRREARKGPVMAGLCTAGYTLAKAGLLDGKRATIHWENQDSFAEEFEEVTLTKSVFV
VDGPRITTAGGTASIDLMLKLIAEDHGEDLANLVADQLIYTSIRTDQDTQRLSIPTRIGVRHPKLGQVIRMMEQNIEDPI
SPAQLAMDVGMSTRQLERLFRRYLNRSPKRYYMELRLGKARNLLMQTDMSVINVALACGFASPSHFSKCYRAHYDTTPYR
ERGSHAARAKV
>Mature_330_residues
SDKAARLRPGEGPKQFVFVLLDQFTMLCFASAVEALRIANRMSGRELYRWTLAGEGGDYAQSSAGIWFRLDSDLSEVTRD
DVVLLCGGIDVANATTKRLLSWVRREARKGPVMAGLCTAGYTLAKAGLLDGKRATIHWENQDSFAEEFEEVTLTKSVFVV
DGPRITTAGGTASIDLMLKLIAEDHGEDLANLVADQLIYTSIRTDQDTQRLSIPTRIGVRHPKLGQVIRMMEQNIEDPIS
PAQLAMDVGMSTRQLERLFRRYLNRSPKRYYMELRLGKARNLLMQTDMSVINVALACGFASPSHFSKCYRAHYDTTPYRE
RGSHAARAKV

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=95, Percent_Identity=31.5789473684211, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37002; Mature: 36871

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKAARLRPGEGPKQFVFVLLDQFTMLCFASAVEALRIANRMSGRELYRWTLAGEGGDY
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
AQSSAGIWFRLDSDLSEVTRDDVVLLCGGIDVANATTKRLLSWVRREARKGPVMAGLCTA
CCCCCCEEEEECCCHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHH
GYTLAKAGLLDGKRATIHWENQDSFAEEFEEVTLTKSVFVVDGPRITTAGGTASIDLMLK
HHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHEEEEEEECCEEEECCCCHHHHHHHH
LIAEDHGEDLANLVADQLIYTSIRTDQDTQRLSIPTRIGVRHPKLGQVIRMMEQNIEDPI
HHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHEECCHHCCCCCCHHHHHHHHHHHHCCCCC
SPAQLAMDVGMSTRQLERLFRRYLNRSPKRYYMELRLGKARNLLMQTDMSVINVALACGF
CHHHHHHHCCCCHHHHHHHHHHHHCCCCHHEEEEEECCHHHHHHHHHHHHHHHHHHHHCC
ASPSHFSKCYRAHYDTTPYRERGSHAARAKV
CCHHHHHHHHHHHCCCCCCHHCCCCHHHCCC
>Mature Secondary Structure 
SDKAARLRPGEGPKQFVFVLLDQFTMLCFASAVEALRIANRMSGRELYRWTLAGEGGDY
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
AQSSAGIWFRLDSDLSEVTRDDVVLLCGGIDVANATTKRLLSWVRREARKGPVMAGLCTA
CCCCCCEEEEECCCHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHH
GYTLAKAGLLDGKRATIHWENQDSFAEEFEEVTLTKSVFVVDGPRITTAGGTASIDLMLK
HHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHEEEEEEECCEEEECCCCHHHHHHHH
LIAEDHGEDLANLVADQLIYTSIRTDQDTQRLSIPTRIGVRHPKLGQVIRMMEQNIEDPI
HHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHEECCHHCCCCCCHHHHHHHHHHHHCCCCC
SPAQLAMDVGMSTRQLERLFRRYLNRSPKRYYMELRLGKARNLLMQTDMSVINVALACGF
CHHHHHHHCCCCHHHHHHHHHHHHCCCCHHEEEEEECCHHHHHHHHHHHHHHHHHHHHCC
ASPSHFSKCYRAHYDTTPYRERGSHAARAKV
CCHHHHHHHHHHHCCCCCCHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]