| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89054642
Identifier: 89054642
GI number: 89054642
Start: 2159409
End: 2159849
Strand: Direct
Name: 89054642
Synonym: Jann_2151
Alternate gene names: NA
Gene position: 2159409-2159849 (Clockwise)
Preceding gene: 89054641
Following gene: 89054643
Centisome position: 50.01
GC content: 63.49
Gene sequence:
>441_bases ATGGCGGAGGATTGCGTCTTCTGTCGCATCATCGCCGGAACGGAGCCTGCGAGCATCGTTCATGACGACGAAAGCTGTCT GGCTTTCATGATCCTGCGCCCGATCCGCGAAGGCGCGTTTATCGTGATCCCGAAGGTCCATATCGACCACTTCACCGACC TTCCCGATGATCTGGCCGCCCACCTCATGATCATCGCCCAACGCTATGGGCGCGGGCTCCTTTCGCTTACGCCCGCAACG CGCATCGGCTACGTCGTCCATGGCTTTGGCGTCCCTCACGCCCACCTCAACGTGGTGCCGCAACACGACACCTTCGACAT CATCTCTGCCCGCTACATCGACGCCGACGCGCCTTACCGCGTCACCGAACGCCTGATCGAACCGCCGTCCCGGGCCGCAC TCGACGCCATGGCCGCCCGTCTGCGCGCCGCTCGCGACTAA
Upstream 100 bases:
>100_bases CGGAACCACCTTCGCCAAGAGTTTCGCGCGCCAGATGGGCAGCCGGTCCGGGCGGGCCGTGGTCCGTGGCATCCTCGGCG GTCTGTTCCGGGGCCGCTGA
Downstream 100 bases:
>100_bases CCGCTCCGCTCCCCACTTCATCTTGGCCGGTACACCTCCCCCCGGAGGGTCGGCACCCATGTAGTCCCCCGGCCAACTGG TCGCGCGCGCCGCTCACATC
Product: histidine triad (HIT) protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 146; Mature: 145
Protein sequence:
>146_residues MAEDCVFCRIIAGTEPASIVHDDESCLAFMILRPIREGAFIVIPKVHIDHFTDLPDDLAAHLMIIAQRYGRGLLSLTPAT RIGYVVHGFGVPHAHLNVVPQHDTFDIISARYIDADAPYRVTERLIEPPSRAALDAMAARLRAARD
Sequences:
>Translated_146_residues MAEDCVFCRIIAGTEPASIVHDDESCLAFMILRPIREGAFIVIPKVHIDHFTDLPDDLAAHLMIIAQRYGRGLLSLTPAT RIGYVVHGFGVPHAHLNVVPQHDTFDIISARYIDADAPYRVTERLIEPPSRAALDAMAARLRAARD >Mature_145_residues AEDCVFCRIIAGTEPASIVHDDESCLAFMILRPIREGAFIVIPKVHIDHFTDLPDDLAAHLMIIAQRYGRGLLSLTPATR IGYVVHGFGVPHAHLNVVPQHDTFDIISARYIDADAPYRVTERLIEPPSRAALDAMAARLRAARD
Specific function: Unknown
COG id: COG0537
COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HIT domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011146 - InterPro: IPR011151 - InterPro: IPR019808 - InterPro: IPR001310 [H]
Pfam domain/function: PF01230 HIT [H]
EC number: NA
Molecular weight: Translated: 16166; Mature: 16035
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: PS51084 HIT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEDCVFCRIIAGTEPASIVHDDESCLAFMILRPIREGAFIVIPKVHIDHFTDLPDDLAA CCCCEEEEEEEECCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHH HLMIIAQRYGRGLLSLTPATRIGYVVHGFGVPHAHLNVVPQHDTFDIISARYIDADAPYR HHHHHHHHHCCCEEEECCCHHHCEEEEECCCCCCEEEEECCCCCHHHHEEEEECCCCCHH VTERLIEPPSRAALDAMAARLRAARD HHHHHHCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure AEDCVFCRIIAGTEPASIVHDDESCLAFMILRPIREGAFIVIPKVHIDHFTDLPDDLAA CCCEEEEEEEECCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHH HLMIIAQRYGRGLLSLTPATRIGYVVHGFGVPHAHLNVVPQHDTFDIISARYIDADAPYR HHHHHHHHHCCCEEEECCCHHHCEEEEECCCCCCEEEEECCCCCHHHHEEEEECCCCCHH VTERLIEPPSRAALDAMAARLRAARD HHHHHHCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]