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The map label for this gene is ccl1 [H]

Identifier: 89054643

GI number: 89054643

Start: 2160030

End: 2162018

Strand: Direct

Name: ccl1 [H]

Synonym: Jann_2152

Alternate gene names: 89054643

Gene position: 2160030-2162018 (Clockwise)

Preceding gene: 89054642

Following gene: 89054644

Centisome position: 50.02

GC content: 64.15

Gene sequence:

>1989_bases
ATGATAGTAGAACTTGGACATTTCGCCCTGATCCTCGCCTTCGCGGTGGCGATCTTCCAGATGATCGTGCCCATGGTCGG
GGCCGCGCGGGGCAACAGCGCGTGGATGGCCACGGCGGAACCGGCCGCCAGCGCGCAATTCATCCTGACGGGCTTCGCCT
TCGCGGCGCTCACCTACGCCTTTGTCACGTCTGACTTTTCGCTCAGCCTTGTGGTCGCGAATTCCCACACCGCCAAGCCG
ATGCTCTACAAAATCTCCGGCGTTTGGGGCAATCATGAAGGGTCATTGCTGCTCTGGGTCGTGATCCTGACGTTGTTCGG
GGCCTGTGCCGCATGGTTTGGGAAGGGTCTGCCGCCAACGCTACGTGCGCGCGTGCTGGCTGTGCAATCCTCTGTTGCCG
TGGCCTTTTTCGCGTTCATCCTGTTCACGTCCAACCCGTTTCTGCGCCTCGCCTCGCCGCCCTTTGACGGCCAGGACCTG
AACCCGCTCCTGCAAGACCCGGGTCTCGCGTTTCACCCGCCATTTCTCTACCTGGGCTATGTGGGCCTCTCCATGGCCTT
CTCCTTCGCCGTCGCCGCCCTGATTGAGGGGCGCGTGGATGCGGCCTGGGGCCGTTGGGTCCGGCCCTGGACCTTGGCGG
CGTGGGTGTTCCTGACCATCGGCATCGGCCTCGGCTCCTGGTGGGCCTATTATGAGCTTGGCTGGGGCGGCTTCTGGTTC
TGGGACCCGGTGGAAAACGCGTCCTTCATGCCGTGGCTGATCTCGGCGGCCCTGCTCCATTCCGCCATCGTGGTCGAGAA
ACGTGAAAGCCTGAAAAGCTGGACCATCCTGCTGGCGATCCTGGCGTTCGGCTTCTCGCTGATCGGCACATTCATTGTCC
GCTCCGGCGTGCTGACGTCGGTCCATGCCTTCGCCAATGACCCCGAGCGCGGGGTGTTCATTCTCCTGATCCTCGCCATC
TTCATGGGCGGGGCGCTGGTCCTGTTTGCCTTCCGCGCAGGCGCGATGGAGGCCAAGGGCGTCTTCTCCACCGTCAGTCG
TGAGAGCGGCCTTGTGGTCAACAACCTGCTTCTGGCCGTGTCCTGTTTCGTGGTCTTCATCGGAACCATCTGGCCGCTGA
TCGCAGAGCTGTTCTTTGACCGGACGCTCTCCGTTGGCCCGCCATTCTTCGATGCGGCGTTTACGCCCTTCGTCTTCGCT
CTCGCCGTCGTCTTGCCCGTGGCCGCGATGATGCCGTGGAAGCGGGCGAAACTGGACAAACCCCTGAAGGCGTTGATGCC
TGCTGCCGTCCTTGGGCTCGCTGTCGGGCTGCTCGCCTGGGCGATGTATACGGGCCGGACAGCCATCGCGCCGCTTGGTG
TTGGTCTGGCCGTCTGGCTGGTGGCGGGGGCCGCGACGGATCTGTGGTCACGCACCGGGCGCGGGCCCATCGGAGGTCGT
CTTGGGCGGCTCACGCGTCTGCCGCGTGCGGATTGGGGCAAGTCGATTGCCCATGCCGGTGTGGGCGTCACGATGTTCGG
CGTGGTGACGCTGACCGGCTACCAGATCGAGGATATCCGCGTCGCGCGAGAGGGCGAGGCCTACCAGGTCGGCGCTTATG
AGGTGGAGCTTCTGGGCGTGGCCGAGAATGTGCGCGGTCCCAATTACATCAGCACGATCGCATCCGTTGCGGTCCGCGAT
CCGGAGACGGGGGCCGAGATCGCGACCCTATCGCCAGAGCGGCGGATCTATCCCGTCGCAGGCATGCCGACGACGGAGGC
TGGGATCAATAATGGCGTGACACGGGACGTCTACATCACGCTCGGCGATCCCCAGCAGGGTGGGGGATGGGCGCTTCGCA
TCTGGATCAAACCCTTCGCCAATTGGGTCTGGGGCGGGACAATCATCATGGCCCTTGGCGGGTTTCTAAGCCTGTCGGAC
CGGCGCTACCGGATGGCGGCGGGGGCGGCGAAACAACGGTCTTCGACCTCGGAGGTTCCTGCGGAATGA

Upstream 100 bases:

>100_bases
TCGCGCGCGCCGCTCACATCCCCGTCATGGCCGGGCCAAAGCGTCACATCCTATCGCTTGTTGTCTGGCAACCGGCGCGG
TCGCGGCCTACAACAGGACC

Downstream 100 bases:

>100_bases
AACAGCTCCTCCTCGCTACGCTCCTCGCAGCGATCTCTTTGGCGGGGCCGTCCTTCGCGGTCCAGCCCGATGAGATCCTG
GATGATCCGGTGCTGGAGGA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 662; Mature: 662

Protein sequence:

>662_residues
MIVELGHFALILAFAVAIFQMIVPMVGAARGNSAWMATAEPAASAQFILTGFAFAALTYAFVTSDFSLSLVVANSHTAKP
MLYKISGVWGNHEGSLLLWVVILTLFGACAAWFGKGLPPTLRARVLAVQSSVAVAFFAFILFTSNPFLRLASPPFDGQDL
NPLLQDPGLAFHPPFLYLGYVGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWVFLTIGIGLGSWWAYYELGWGGFWF
WDPVENASFMPWLISAALLHSAIVVEKRESLKSWTILLAILAFGFSLIGTFIVRSGVLTSVHAFANDPERGVFILLILAI
FMGGALVLFAFRAGAMEAKGVFSTVSRESGLVVNNLLLAVSCFVVFIGTIWPLIAELFFDRTLSVGPPFFDAAFTPFVFA
LAVVLPVAAMMPWKRAKLDKPLKALMPAAVLGLAVGLLAWAMYTGRTAIAPLGVGLAVWLVAGAATDLWSRTGRGPIGGR
LGRLTRLPRADWGKSIAHAGVGVTMFGVVTLTGYQIEDIRVAREGEAYQVGAYEVELLGVAENVRGPNYISTIASVAVRD
PETGAEIATLSPERRIYPVAGMPTTEAGINNGVTRDVYITLGDPQQGGGWALRIWIKPFANWVWGGTIIMALGGFLSLSD
RRYRMAAGAAKQRSSTSEVPAE

Sequences:

>Translated_662_residues
MIVELGHFALILAFAVAIFQMIVPMVGAARGNSAWMATAEPAASAQFILTGFAFAALTYAFVTSDFSLSLVVANSHTAKP
MLYKISGVWGNHEGSLLLWVVILTLFGACAAWFGKGLPPTLRARVLAVQSSVAVAFFAFILFTSNPFLRLASPPFDGQDL
NPLLQDPGLAFHPPFLYLGYVGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWVFLTIGIGLGSWWAYYELGWGGFWF
WDPVENASFMPWLISAALLHSAIVVEKRESLKSWTILLAILAFGFSLIGTFIVRSGVLTSVHAFANDPERGVFILLILAI
FMGGALVLFAFRAGAMEAKGVFSTVSRESGLVVNNLLLAVSCFVVFIGTIWPLIAELFFDRTLSVGPPFFDAAFTPFVFA
LAVVLPVAAMMPWKRAKLDKPLKALMPAAVLGLAVGLLAWAMYTGRTAIAPLGVGLAVWLVAGAATDLWSRTGRGPIGGR
LGRLTRLPRADWGKSIAHAGVGVTMFGVVTLTGYQIEDIRVAREGEAYQVGAYEVELLGVAENVRGPNYISTIASVAVRD
PETGAEIATLSPERRIYPVAGMPTTEAGINNGVTRDVYITLGDPQQGGGWALRIWIKPFANWVWGGTIIMALGGFLSLSD
RRYRMAAGAAKQRSSTSEVPAE
>Mature_662_residues
MIVELGHFALILAFAVAIFQMIVPMVGAARGNSAWMATAEPAASAQFILTGFAFAALTYAFVTSDFSLSLVVANSHTAKP
MLYKISGVWGNHEGSLLLWVVILTLFGACAAWFGKGLPPTLRARVLAVQSSVAVAFFAFILFTSNPFLRLASPPFDGQDL
NPLLQDPGLAFHPPFLYLGYVGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWVFLTIGIGLGSWWAYYELGWGGFWF
WDPVENASFMPWLISAALLHSAIVVEKRESLKSWTILLAILAFGFSLIGTFIVRSGVLTSVHAFANDPERGVFILLILAI
FMGGALVLFAFRAGAMEAKGVFSTVSRESGLVVNNLLLAVSCFVVFIGTIWPLIAELFFDRTLSVGPPFFDAAFTPFVFA
LAVVLPVAAMMPWKRAKLDKPLKALMPAAVLGLAVGLLAWAMYTGRTAIAPLGVGLAVWLVAGAATDLWSRTGRGPIGGR
LGRLTRLPRADWGKSIAHAGVGVTMFGVVTLTGYQIEDIRVAREGEAYQVGAYEVELLGVAENVRGPNYISTIASVAVRD
PETGAEIATLSPERRIYPVAGMPTTEAGINNGVTRDVYITLGDPQQGGGWALRIWIKPFANWVWGGTIIMALGGFLSLSD
RRYRMAAGAAKQRSSTSEVPAE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=657, Percent_Identity=44.7488584474886, Blast_Score=513, Evalue=1e-146,
Organism=Escherichia coli, GI1790511, Length=362, Percent_Identity=45.5801104972376, Blast_Score=265, Evalue=7e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 71215; Mature: 71215

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVELGHFALILAFAVAIFQMIVPMVGAARGNSAWMATAEPAASAQFILTGFAFAALTYA
CEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
FVTSDFSLSLVVANSHTAKPMLYKISGVWGNHEGSLLLWVVILTLFGACAAWFGKGLPPT
HHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
LRARVLAVQSSVAVAFFAFILFTSNPFLRLASPPFDGQDLNPLLQDPGLAFHPPFLYLGY
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCCCHHHHHHH
VGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWVFLTIGIGLGSWWAYYELGWGGFWF
HHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHEEECCCCEEE
WDPVENASFMPWLISAALLHSAIVVEKRESLKSWTILLAILAFGFSLIGTFIVRSGVLTS
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFANDPERGVFILLILAIFMGGALVLFAFRAGAMEAKGVFSTVSRESGLVVNNLLLAV
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHH
SCFVVFIGTIWPLIAELFFDRTLSVGPPFFDAAFTPFVFALAVVLPVAAMMPWKRAKLDK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC
PLKALMPAAVLGLAVGLLAWAMYTGRTAIAPLGVGLAVWLVAGAATDLWSRTGRGPIGGR
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
LGRLTRLPRADWGKSIAHAGVGVTMFGVVTLTGYQIEDIRVAREGEAYQVGAYEVELLGV
HHHHHCCCCCCHHHHHHHCCCCHHEEHHHHCCCEEEEEEEEECCCCEEEECCEEEEEEEE
AENVRGPNYISTIASVAVRDPETGAEIATLSPERRIYPVAGMPTTEAGINNGVTRDVYIT
HHCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEE
LGDPQQGGGWALRIWIKPFANWVWGGTIIMALGGFLSLSDRRYRMAAGAAKQRSSTSEVP
ECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCHHHHCCCCCCCC
AE
CC
>Mature Secondary Structure
MIVELGHFALILAFAVAIFQMIVPMVGAARGNSAWMATAEPAASAQFILTGFAFAALTYA
CEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
FVTSDFSLSLVVANSHTAKPMLYKISGVWGNHEGSLLLWVVILTLFGACAAWFGKGLPPT
HHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
LRARVLAVQSSVAVAFFAFILFTSNPFLRLASPPFDGQDLNPLLQDPGLAFHPPFLYLGY
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCCCHHHHHHH
VGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWVFLTIGIGLGSWWAYYELGWGGFWF
HHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHEEECCCCEEE
WDPVENASFMPWLISAALLHSAIVVEKRESLKSWTILLAILAFGFSLIGTFIVRSGVLTS
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFANDPERGVFILLILAIFMGGALVLFAFRAGAMEAKGVFSTVSRESGLVVNNLLLAV
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHH
SCFVVFIGTIWPLIAELFFDRTLSVGPPFFDAAFTPFVFALAVVLPVAAMMPWKRAKLDK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC
PLKALMPAAVLGLAVGLLAWAMYTGRTAIAPLGVGLAVWLVAGAATDLWSRTGRGPIGGR
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
LGRLTRLPRADWGKSIAHAGVGVTMFGVVTLTGYQIEDIRVAREGEAYQVGAYEVELLGV
HHHHHCCCCCCHHHHHHHCCCCHHEEHHHHCCCEEEEEEEEECCCCEEEECCEEEEEEEE
AENVRGPNYISTIASVAVRDPETGAEIATLSPERRIYPVAGMPTTEAGINNGVTRDVYIT
HHCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEE
LGDPQQGGGWALRIWIKPFANWVWGGTIIMALGGFLSLSDRRYRMAAGAAKQRSSTSEVP
ECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCHHHHCCCCCCCC
AE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1310666 [H]