| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89053796
Identifier: 89053796
GI number: 89053796
Start: 1264396
End: 1265379
Strand: Reverse
Name: 89053796
Synonym: Jann_1305
Alternate gene names: NA
Gene position: 1265379-1264396 (Counterclockwise)
Preceding gene: 89053797
Following gene: 89053795
Centisome position: 29.3
GC content: 62.09
Gene sequence:
>984_bases ATGACGCTTACATCCAATCGCCGACAGCTTCTGATCGGCGCCGCCGCCACGCTCGCCCTGCCCGCCTACATCCGGCGCGC CAACGCCCAAAGCGTGATCCGCATTGCAGGCGTGCACAACTCTCCGGTCGAGAACGCGTGGAACAGTCGCATTCACCTGG CCTTCCAGGAAGCGGCAGCGTCGGGTCTGATCGAATATGAATTCTCCGAAGGCGTGGCCCCCACCGACTATCCCCGCGCC ATGCGCGAATATGCGGAAAGCGGCGTGGAGCTGGTGTGGGGGGAGTCCTACGCGGTCGAGCGTGAAGCGCGCGAAGTGGC TGCCGACTACCCCGATACGGCGTTCCTTATGGGCTCGTCCGGCGGGCCAGAGGGGGAAAACTTTGGCGTTTTCGGCACTC GCAATCACGAGGCCGCCTACCTTGCCGGCATGTTGGCGGGTCGGATGTCGGAGACAGGCGTGTTCGGCTCCGTCGGCGGT TTCCCAATCCCAGAGGTGAACCTTCTGATCAACGCGTTCCGTATGGGCGTCACCGAAGTGAACCCCGATGCAACCTTCCT CAACGCATTCCTTGGCGCATGGTTCGATCCGGCGCGCGCCAAAGAGGCTGGGTTGGCGCAGATCGATGCGGGTGCGGACA TCTTGTTCGGTGAGCGCATCGGTACAGCGGACGCCGCTCAAGAACGCGGAGTGCGAGCCATCGGATCGCTCATCGATTAC ACTCCGCGTTATCCGGGAACCGTCTTCGCCAATGCGATTTGGAATTACGGCCCGACGATTGAAGCCATCGTTGCGGATGT GCAGGCCAGTACCCCCGTGGGCCGCGACTACACGGAGTATTCGTTCATGGTCCACGGCGGCAACGAATTGATCTACGTGG CCGACGAAGTCCCAGCTGATGCCATCGCATCCATGGAAGCCCGTCAGGCGCAAATCCAGTCCGGCGAATGGGACGTGCCG ATTGATAACGACGAGCCGGCCTAA
Upstream 100 bases:
>100_bases GGCTTACCTTGCCGGACCGCCCCGAAACGCTTGATCCAGCGGATTACCCGCCGACAACCCAAGATCAATGACAACAGCCA TCAACACGAGAGGACCTTCC
Downstream 100 bases:
>100_bases TACGTGGACGCCACGGCCCTCGCCAATGCCATCGCTCTGGGGCACACAACCGCCCCTGCCGTGATGAATGCCACTCTCGC TCGCGCCCATGCGCAGGTGG
Product: basic membrane lipoprotein
Products: NA
Alternate protein names: Bmp Family Protein; Basic Membrane Protein; Lipoprotein; Bmp Family Membrane Protein; ABC Transporter; Lipoprotein Periplasmic Protein; ABC Transporter Periplasmic Protein Surface Lipoprotein; Basic Membrane Lipoprotein Family; Lipoprotein Bmp Family; ABC Transporter Periplasmic/Surface Lipoprotein; Twin-Arginine Translocation Pathway Signal; Outer Membrane Lipoprotein; Membrane Lipoprotein; Tat Pathway Signal Sequence/Basic Membrane Protein; Basic Membrane Protein Family Protein; Surface Lipoprotein; Signal Peptide Protein; ABC Transporter Periplasmic Protein; ABC-Type Transport Periplasmic Component
Number of amino acids: Translated: 327; Mature: 326
Protein sequence:
>327_residues MTLTSNRRQLLIGAAATLALPAYIRRANAQSVIRIAGVHNSPVENAWNSRIHLAFQEAAASGLIEYEFSEGVAPTDYPRA MREYAESGVELVWGESYAVEREAREVAADYPDTAFLMGSSGGPEGENFGVFGTRNHEAAYLAGMLAGRMSETGVFGSVGG FPIPEVNLLINAFRMGVTEVNPDATFLNAFLGAWFDPARAKEAGLAQIDAGADILFGERIGTADAAQERGVRAIGSLIDY TPRYPGTVFANAIWNYGPTIEAIVADVQASTPVGRDYTEYSFMVHGGNELIYVADEVPADAIASMEARQAQIQSGEWDVP IDNDEPA
Sequences:
>Translated_327_residues MTLTSNRRQLLIGAAATLALPAYIRRANAQSVIRIAGVHNSPVENAWNSRIHLAFQEAAASGLIEYEFSEGVAPTDYPRA MREYAESGVELVWGESYAVEREAREVAADYPDTAFLMGSSGGPEGENFGVFGTRNHEAAYLAGMLAGRMSETGVFGSVGG FPIPEVNLLINAFRMGVTEVNPDATFLNAFLGAWFDPARAKEAGLAQIDAGADILFGERIGTADAAQERGVRAIGSLIDY TPRYPGTVFANAIWNYGPTIEAIVADVQASTPVGRDYTEYSFMVHGGNELIYVADEVPADAIASMEARQAQIQSGEWDVP IDNDEPA >Mature_326_residues TLTSNRRQLLIGAAATLALPAYIRRANAQSVIRIAGVHNSPVENAWNSRIHLAFQEAAASGLIEYEFSEGVAPTDYPRAM REYAESGVELVWGESYAVEREAREVAADYPDTAFLMGSSGGPEGENFGVFGTRNHEAAYLAGMLAGRMSETGVFGSVGGF PIPEVNLLINAFRMGVTEVNPDATFLNAFLGAWFDPARAKEAGLAQIDAGADILFGERIGTADAAQERGVRAIGSLIDYT PRYPGTVFANAIWNYGPTIEAIVADVQASTPVGRDYTEYSFMVHGGNELIYVADEVPADAIASMEARQAQIQSGEWDVPI DNDEPA
Specific function: Unknown
COG id: COG1744
COG function: function code R; Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35094; Mature: 34963
Theoretical pI: Translated: 4.16; Mature: 4.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLTSNRRQLLIGAAATLALPAYIRRANAQSVIRIAGVHNSPVENAWNSRIHLAFQEAAA CCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHCCCCEEEEEEHHHHH SGLIEYEFSEGVAPTDYPRAMREYAESGVELVWGESYAVEREAREVAADYPDTAFLMGSS CCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEECC GGPEGENFGVFGTRNHEAAYLAGMLAGRMSETGVFGSVGGFPIPEVNLLINAFRMGVTEV CCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEC NPDATFLNAFLGAWFDPARAKEAGLAQIDAGADILFGERIGTADAAQERGVRAIGSLIDY CCCHHHHHHHHHHCCCCHHHHHCCCEEECCCCCEEECCCCCCHHHHHHCCHHHHHHHHHC TPRYPGTVFANAIWNYGPTIEAIVADVQASTPVGRDYTEYSFMVHGGNELIYVADEVPAD CCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEECCCCHH AIASMEARQAQIQSGEWDVPIDNDEPA HHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure TLTSNRRQLLIGAAATLALPAYIRRANAQSVIRIAGVHNSPVENAWNSRIHLAFQEAAA CCCCCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHCCCCEEEEEEHHHHH SGLIEYEFSEGVAPTDYPRAMREYAESGVELVWGESYAVEREAREVAADYPDTAFLMGSS CCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEECC GGPEGENFGVFGTRNHEAAYLAGMLAGRMSETGVFGSVGGFPIPEVNLLINAFRMGVTEV CCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEC NPDATFLNAFLGAWFDPARAKEAGLAQIDAGADILFGERIGTADAAQERGVRAIGSLIDY CCCHHHHHHHHHHCCCCHHHHHCCCEEECCCCCEEECCCCCCHHHHHHCCHHHHHHHHHC TPRYPGTVFANAIWNYGPTIEAIVADVQASTPVGRDYTEYSFMVHGGNELIYVADEVPAD CCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEECCCCHH AIASMEARQAQIQSGEWDVPIDNDEPA HHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA