Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89053771

Identifier: 89053771

GI number: 89053771

Start: 1240989

End: 1241528

Strand: Reverse

Name: 89053771

Synonym: Jann_1280

Alternate gene names: NA

Gene position: 1241528-1240989 (Counterclockwise)

Preceding gene: 89053779

Following gene: 89053770

Centisome position: 28.75

GC content: 51.48

Gene sequence:

>540_bases
GTGGGGCATGTTTTGCAAAGTTTCAGGAACGCCGCTGGCACCAGTGCTCCAACCGTCAAGCATCCCTTCAAACTAAAAAA
GGTCACCACCACGCCAGCGCGACTCATAAACGTCAACAAATGGGTCAGGGACGTCGGCGCGATTAGCAGCCCAGCGCCAC
ACGGTCGTAAGATTAATGCTGTATCTCTCCGCGACATCGACATCACGCAGAGATCTGTCGCGAAGGGACCCGTCATTTGG
ATCAAGAACATGCGGACAGCCTGGGAGAGTACCGTCAGCCAACGGGTCGAATTTCGAAGGAACTGTCTCGGGACTGTTCG
AGAAAACGGAGTCGTGCATGAAGATTGCCCTAGAGTTTGGACAATCGGGCTCCATGCGCCGATCTATGTTTTTCATTTCA
GCGAACAGTATCGCCAAGGAGCAGCAGCGAAACATCCCATTACCTGCCGCGTCAACTGGCCAAAGCAAACTAGAAATGTG
GGCCTGAATGTGGGTCCGAACCTAAATGCAGGGTATTTTTTTTATAATCCAGATATTTGA

Upstream 100 bases:

>100_bases
GCCCCGGGGGGAAATCCGAAGTCGTCTGTGCTCAGCGATAAATTGCGGAGGTCGAAGCTGTGTAGCGACGCACGACCACT
TCAAGGCGGAGGAAACGCTC

Downstream 100 bases:

>100_bases
ATACGAAAATTGGCGGAGGAGGTGGGATTCGAACCCACGGTACGCTTTCACGCACGCCGGTTTTCAAGACCGGTGCATTC
GACCACTCTGCCACTCCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MGHVLQSFRNAAGTSAPTVKHPFKLKKVTTTPARLINVNKWVRDVGAISSPAPHGRKINAVSLRDIDITQRSVAKGPVIW
IKNMRTAWESTVSQRVEFRRNCLGTVRENGVVHEDCPRVWTIGLHAPIYVFHFSEQYRQGAAAKHPITCRVNWPKQTRNV
GLNVGPNLNAGYFFYNPDI

Sequences:

>Translated_179_residues
MGHVLQSFRNAAGTSAPTVKHPFKLKKVTTTPARLINVNKWVRDVGAISSPAPHGRKINAVSLRDIDITQRSVAKGPVIW
IKNMRTAWESTVSQRVEFRRNCLGTVRENGVVHEDCPRVWTIGLHAPIYVFHFSEQYRQGAAAKHPITCRVNWPKQTRNV
GLNVGPNLNAGYFFYNPDI
>Mature_178_residues
GHVLQSFRNAAGTSAPTVKHPFKLKKVTTTPARLINVNKWVRDVGAISSPAPHGRKINAVSLRDIDITQRSVAKGPVIWI
KNMRTAWESTVSQRVEFRRNCLGTVRENGVVHEDCPRVWTIGLHAPIYVFHFSEQYRQGAAAKHPITCRVNWPKQTRNVG
LNVGPNLNAGYFFYNPDI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20137; Mature: 20006

Theoretical pI: Translated: 11.12; Mature: 11.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHVLQSFRNAAGTSAPTVKHPFKLKKVTTTPARLINVNKWVRDVGAISSPAPHGRKINA
CCHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
VSLRDIDITQRSVAKGPVIWIKNMRTAWESTVSQRVEFRRNCLGTVRENGVVHEDCPRVW
EEEEECCCCHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
TIGLHAPIYVFHFSEQYRQGAAAKHPITCRVNWPKQTRNVGLNVGPNLNAGYFFYNPDI
EEECCCEEEEEECCHHHHCCCCCCCCEEEEEECCHHHHCCCCCCCCCCCCCEEEECCCC
>Mature Secondary Structure 
GHVLQSFRNAAGTSAPTVKHPFKLKKVTTTPARLINVNKWVRDVGAISSPAPHGRKINA
CHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
VSLRDIDITQRSVAKGPVIWIKNMRTAWESTVSQRVEFRRNCLGTVRENGVVHEDCPRVW
EEEEECCCCHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
TIGLHAPIYVFHFSEQYRQGAAAKHPITCRVNWPKQTRNVGLNVGPNLNAGYFFYNPDI
EEECCCEEEEEECCHHHHCCCCCCCCEEEEEECCHHHHCCCCCCCCCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA