| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89053770
Identifier: 89053770
GI number: 89053770
Start: 1239730
End: 1240626
Strand: Reverse
Name: 89053770
Synonym: Jann_1279
Alternate gene names: NA
Gene position: 1240626-1239730 (Counterclockwise)
Preceding gene: 89053771
Following gene: 89053769
Centisome position: 28.73
GC content: 65.44
Gene sequence:
>897_bases ATGAGCAGCATGACCCTAATCCGCCCCACGTCCAGAATCCGCGCGTTTTCCCTCGCGCTTGTGCCCGTGATCGCCCTCGC AGGCTGCATGGAAGAAGGCGAAGGCCTCTTCAGTTCCCGCGACGCGGACGCTGACGGCCCGGCGCCCATCGGGGCCACGC GCCTGGTGGAACGCGATGTGGAAGCGCCCGAGGTTTTCGAAGTCACGACAGACGGCCTTTGGGATGGTCGCCCGTCCCTG GGTGGTGTCTGGGTGGCACATCCCGACGTCACCGATCCTGAGCGTGTGATCATCCGCAACGATGAAAACGGGCGCTTCGT GATTGGGGCGCTCTTCCGGCGCGAGCGCGATAATCCTGGCCCGGATCTCCAGATTTCCTCGGACGCCGCCGCCGCCATTG GCGCGCTTGCGGGCGATCCCACGATGCTGAACGTCACAGCGCTGCGCCGGGAAGAGGTGGCCGACACCGCCGAGGCCGCC CCTGACGCAACGGCTCCGGGCGCAGCCATTGCCGCATCGGCCATCGCGGGTGAGATCACGTCTTCCCCGCTGGACGGTGC CGACACCACCATCGAAGCCGCCGCAGCAGCAATCGACGCCGCCGAACCCGCACCGCAACCCACGGCACAGCCCACGACTG CCCGCGCCACGCCAGACGGCGCGCCAGAGCGGGCATTTATTCAGATCGGCATCTTCTCTGTGCAAGAAAACGCCACCAAT ACCGGGCAGGCCTTGCGCAGTGCGGGCCTTGAGCCCACAATCTATGATCAGTCAACCAACGGTCGCCAGTTCTGGCGCGT TGTGGTGGGCCCCGCCGATAGCGAGGGCTCGCGCGATGCGATCCTGGCAAGTGTCCGTGATCTTGGCTTTGATGATGCCT TTTTCGTAAGACGCTAG
Upstream 100 bases:
>100_bases CAGATCGCTGTTTGCGTGGCCTCAACCTCGCAAATCCGGCAACGTCCGGGAGACTTAAACAACCCCCCGCGCGCCTGACG CGTGGGGACAGAGCGCAGAG
Downstream 100 bases:
>100_bases GACGCCATGCAAATCGCTACTCTGACAAAACCCGTCGCAACCCTCCTTGCGGCGGGTTGTTTCTTCGTCTCAAGCCTGAT GGCCAACGCCCAAGGCTATG
Product: putative lipoprotein
Products: NA
Alternate protein names: Sporulation ; Lipoprotein; Sporulation Domain-Containing Protein; Sporulation And Repeat Protein
Number of amino acids: Translated: 298; Mature: 297
Protein sequence:
>298_residues MSSMTLIRPTSRIRAFSLALVPVIALAGCMEEGEGLFSSRDADADGPAPIGATRLVERDVEAPEVFEVTTDGLWDGRPSL GGVWVAHPDVTDPERVIIRNDENGRFVIGALFRRERDNPGPDLQISSDAAAAIGALAGDPTMLNVTALRREEVADTAEAA PDATAPGAAIAASAIAGEITSSPLDGADTTIEAAAAAIDAAEPAPQPTAQPTTARATPDGAPERAFIQIGIFSVQENATN TGQALRSAGLEPTIYDQSTNGRQFWRVVVGPADSEGSRDAILASVRDLGFDDAFFVRR
Sequences:
>Translated_298_residues MSSMTLIRPTSRIRAFSLALVPVIALAGCMEEGEGLFSSRDADADGPAPIGATRLVERDVEAPEVFEVTTDGLWDGRPSL GGVWVAHPDVTDPERVIIRNDENGRFVIGALFRRERDNPGPDLQISSDAAAAIGALAGDPTMLNVTALRREEVADTAEAA PDATAPGAAIAASAIAGEITSSPLDGADTTIEAAAAAIDAAEPAPQPTAQPTTARATPDGAPERAFIQIGIFSVQENATN TGQALRSAGLEPTIYDQSTNGRQFWRVVVGPADSEGSRDAILASVRDLGFDDAFFVRR >Mature_297_residues SSMTLIRPTSRIRAFSLALVPVIALAGCMEEGEGLFSSRDADADGPAPIGATRLVERDVEAPEVFEVTTDGLWDGRPSLG GVWVAHPDVTDPERVIIRNDENGRFVIGALFRRERDNPGPDLQISSDAAAAIGALAGDPTMLNVTALRREEVADTAEAAP DATAPGAAIAASAIAGEITSSPLDGADTTIEAAAAAIDAAEPAPQPTAQPTTARATPDGAPERAFIQIGIFSVQENATNT GQALRSAGLEPTIYDQSTNGRQFWRVVVGPADSEGSRDAILASVRDLGFDDAFFVRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31105; Mature: 30974
Theoretical pI: Translated: 4.10; Mature: 4.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSMTLIRPTSRIRAFSLALVPVIALAGCMEEGEGLFSSRDADADGPAPIGATRLVERDV CCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCC EAPEVFEVTTDGLWDGRPSLGGVWVAHPDVTDPERVIIRNDENGRFVIGALFRRERDNPG CCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEHHHHCCCCCC PDLQISSDAAAAIGALAGDPTMLNVTALRREEVADTAEAAPDATAPGAAIAASAIAGEIT CCEEECCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC SSPLDGADTTIEAAAAAIDAAEPAPQPTAQPTTARATPDGAPERAFIQIGIFSVQENATN CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCH TGQALRSAGLEPTIYDQSTNGRQFWRVVVGPADSEGSRDAILASVRDLGFDDAFFVRR HHHHHHHCCCCCEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEC >Mature Secondary Structure SSMTLIRPTSRIRAFSLALVPVIALAGCMEEGEGLFSSRDADADGPAPIGATRLVERDV CCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCC EAPEVFEVTTDGLWDGRPSLGGVWVAHPDVTDPERVIIRNDENGRFVIGALFRRERDNPG CCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEHHHHCCCCCC PDLQISSDAAAAIGALAGDPTMLNVTALRREEVADTAEAAPDATAPGAAIAASAIAGEIT CCEEECCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC SSPLDGADTTIEAAAAAIDAAEPAPQPTAQPTTARATPDGAPERAFIQIGIFSVQENATN CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCH TGQALRSAGLEPTIYDQSTNGRQFWRVVVGPADSEGSRDAILASVRDLGFDDAFFVRR HHHHHHHCCCCCEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA