| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89053706
Identifier: 89053706
GI number: 89053706
Start: 1175195
End: 1176097
Strand: Direct
Name: 89053706
Synonym: Jann_1215
Alternate gene names: NA
Gene position: 1175195-1176097 (Clockwise)
Preceding gene: 89053705
Following gene: 89053707
Centisome position: 27.22
GC content: 64.45
Gene sequence:
>903_bases ATGAGTGCTTGGATCACCTCCATCGAAGGGACGCCAGCGGGGGCGCAGGCGGCCCTGATCCTGGCGCTGTCGGCTGCCGT TCTGCACGCCGTCTTTGGCGCATTGCAGAAGGGCCGCCACGATCCGCTTTTGGCGCGCGGGGCGATTGATGCGAGCTACG GTCTTATGGCCGCACCCATCGCCATCTTCGTCGTACCCTGGCCCGAGCCGCATATGTGGCCGATCTTCGCGGGCGCGTTC GTCATCCACGCGGGCTACAAATTCGCGGTCTTGGGGGCGTTTCGCCGGGGCGCGTTCACGGTCGTCTATCCGGTCATGCG GGGGACCGGGCCGCTCTTTACGGTCATCGGTGCGTGGCTGATCTTTGGTGAGACCTTCAACGGCATCCAATGGCTTGGCG TGGCCGTCCTGCTGGCGGGCCTCTATGGCCTCGCGGCTTACAACATGTCCCGGATCACCGTCGCGCGGGACACGTTGGTC AACGCACTTCTTTTTGCCGTCCTCACCGGGCTCTTCGTCGCCGTCTACACCACCTATGACGCCTATGGCATCCGCGCGAC GGCGGACCCGTTCACCTTTCTTGCGTGGTTTTTCTTCATCGACGGGTTGCTCTTCCCTGTCCTTGCCATACGCTTCTACG CCCGGATGCCCGATAAACCGACGCTCGCGCCCCTTGCGCTGCGGGGCATTGTGGGGGGCTTCATCGCGTTTGCGTCCTTC GGATCCATCATGCTGGCCACACGTCTGGACCAGGTCGGCGAAGCGGCGGTCCTGCGCGAAACCTCCACCGTGTTCGCGGC CCTCATCGGCTGGCTGTTCCTGCGTGAACCGGTCGGGCCCGCCCGCGCGGCTTTGATGGGTTTGATCGCGCTCGGTGCGG TGATAGTGGAAGCCGGAGGATAG
Upstream 100 bases:
>100_bases GCAGATTGATGATCTGCAACCTTTCGATCCCGAAGAATTTGCCGATGCCCTTGTTGGGCTTGATCGTTCCTGATGCTTAT CCACACGCCTTGTGGATAGA
Downstream 100 bases:
>100_bases GAGCGCGCAATGGCCGAGAAGCAAATAAACCCGTGGCTGAAGAATGGCTTGGAACTGGGCCCGCCGATCCTATTCTTCAT CGCATACCTGTACTTGCAGG
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; Integral Membrane; Transporter DME Family DMT Superfamily; Transporter Permease Protein; Drug/Metabolite Transporter Superfamily Permease; Drug/Metabolite Exporter Family Protein; Transporter Of DMT Superfamily; Transporter Dme Family; DMT Family Permease
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MSAWITSIEGTPAGAQAALILALSAAVLHAVFGALQKGRHDPLLARGAIDASYGLMAAPIAIFVVPWPEPHMWPIFAGAF VIHAGYKFAVLGAFRRGAFTVVYPVMRGTGPLFTVIGAWLIFGETFNGIQWLGVAVLLAGLYGLAAYNMSRITVARDTLV NALLFAVLTGLFVAVYTTYDAYGIRATADPFTFLAWFFFIDGLLFPVLAIRFYARMPDKPTLAPLALRGIVGGFIAFASF GSIMLATRLDQVGEAAVLRETSTVFAALIGWLFLREPVGPARAALMGLIALGAVIVEAGG
Sequences:
>Translated_300_residues MSAWITSIEGTPAGAQAALILALSAAVLHAVFGALQKGRHDPLLARGAIDASYGLMAAPIAIFVVPWPEPHMWPIFAGAF VIHAGYKFAVLGAFRRGAFTVVYPVMRGTGPLFTVIGAWLIFGETFNGIQWLGVAVLLAGLYGLAAYNMSRITVARDTLV NALLFAVLTGLFVAVYTTYDAYGIRATADPFTFLAWFFFIDGLLFPVLAIRFYARMPDKPTLAPLALRGIVGGFIAFASF GSIMLATRLDQVGEAAVLRETSTVFAALIGWLFLREPVGPARAALMGLIALGAVIVEAGG >Mature_299_residues SAWITSIEGTPAGAQAALILALSAAVLHAVFGALQKGRHDPLLARGAIDASYGLMAAPIAIFVVPWPEPHMWPIFAGAFV IHAGYKFAVLGAFRRGAFTVVYPVMRGTGPLFTVIGAWLIFGETFNGIQWLGVAVLLAGLYGLAAYNMSRITVARDTLVN ALLFAVLTGLFVAVYTTYDAYGIRATADPFTFLAWFFFIDGLLFPVLAIRFYARMPDKPTLAPLALRGIVGGFIAFASFG SIMLATRLDQVGEAAVLRETSTVFAALIGWLFLREPVGPARAALMGLIALGAVIVEAGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31860; Mature: 31729
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAWITSIEGTPAGAQAALILALSAAVLHAVFGALQKGRHDPLLARGAIDASYGLMAAPI CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCE AIFVVPWPEPHMWPIFAGAFVIHAGYKFAVLGAFRRGAFTVVYPVMRGTGPLFTVIGAWL EEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHEEEHHHHCCCHHHHHHHHHH IFGETFNGIQWLGVAVLLAGLYGLAAYNMSRITVARDTLVNALLFAVLTGLFVAVYTTYD HHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AYGIRATADPFTFLAWFFFIDGLLFPVLAIRFYARMPDKPTLAPLALRGIVGGFIAFASF CCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH GSIMLATRLDQVGEAAVLRETSTVFAALIGWLFLREPVGPARAALMGLIALGAVIVEAGG HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SAWITSIEGTPAGAQAALILALSAAVLHAVFGALQKGRHDPLLARGAIDASYGLMAAPI CCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCE AIFVVPWPEPHMWPIFAGAFVIHAGYKFAVLGAFRRGAFTVVYPVMRGTGPLFTVIGAWL EEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHEEEHHHHCCCHHHHHHHHHH IFGETFNGIQWLGVAVLLAGLYGLAAYNMSRITVARDTLVNALLFAVLTGLFVAVYTTYD HHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AYGIRATADPFTFLAWFFFIDGLLFPVLAIRFYARMPDKPTLAPLALRGIVGGFIAFASF CCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH GSIMLATRLDQVGEAAVLRETSTVFAALIGWLFLREPVGPARAALMGLIALGAVIVEAGG HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA