| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89053041
Identifier: 89053041
GI number: 89053041
Start: 538435
End: 538644
Strand: Reverse
Name: 89053041
Synonym: Jann_0550
Alternate gene names: NA
Gene position: 538644-538435 (Counterclockwise)
Preceding gene: 89053042
Following gene: 89053040
Centisome position: 12.47
GC content: 56.67
Gene sequence:
>210_bases ATGACAGACGACCCCCTTCTTATCGCCGGACTTGTGGCCTGTGTCGCCGTTCTGGTGATCTTGCTTCTGGGCATCAACTC GTTCCGCAAAGGCGGCGCTGATGGTGCAAAGACGTCCAACAAACTGATGCAATGGCGCTTGGGCGCGCAATTTCTGGCCA TCCTCTTGTTGCTGGCCTTCGTCTATTTCCGTCGACAATCCGGGGGCTGA
Upstream 100 bases:
>100_bases CTCAGCGGCTGCTGGACGCGATTGCGGTCAGACTTTGAACCGCAGCCTCTAGCAATCCGCGCCACGCCTGCTACCTCCTG CCAAACACTTTGGAGACGAC
Downstream 100 bases:
>100_bases GCACATGGTTGTTCTGAACAAAATCTACACGCGCACGGGCGACGCCGGTGAAACGGCGTTGGGTGATGGCAGCCGCGTGG CCAAATTTTCACAGCGCGTG
Product: hypoxia induced protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 69; Mature: 68
Protein sequence:
>69_residues MTDDPLLIAGLVACVAVLVILLLGINSFRKGGADGAKTSNKLMQWRLGAQFLAILLLLAFVYFRRQSGG
Sequences:
>Translated_69_residues MTDDPLLIAGLVACVAVLVILLLGINSFRKGGADGAKTSNKLMQWRLGAQFLAILLLLAFVYFRRQSGG >Mature_68_residues TDDPLLIAGLVACVAVLVILLLGINSFRKGGADGAKTSNKLMQWRLGAQFLAILLLLAFVYFRRQSGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7407; Mature: 7276
Theoretical pI: Translated: 10.62; Mature: 10.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDDPLLIAGLVACVAVLVILLLGINSFRKGGADGAKTSNKLMQWRLGAQFLAILLLLAF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VYFRRQSGG HHHHHHCCC >Mature Secondary Structure TDDPLLIAGLVACVAVLVILLLGINSFRKGGADGAKTSNKLMQWRLGAQFLAILLLLAF CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VYFRRQSGG HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA