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The map label for this gene is ybbN [H]

Identifier: 89052913

GI number: 89052913

Start: 425376

End: 426296

Strand: Direct

Name: ybbN [H]

Synonym: Jann_0422

Alternate gene names: 89052913

Gene position: 425376-426296 (Clockwise)

Preceding gene: 89052912

Following gene: 89052914

Centisome position: 9.85

GC content: 62.65

Gene sequence:

>921_bases
ATGCTCGAACTCGGCCAAACCCCGAACGCGGCCCCCGACGCCGCTCCCGCTGATCTGATCAAGGACACCACGGACGCCAC
CTTCATGGCCGATGTGGTGGATGCCAGCCAGACAACCCCCGTGATCGTGGATTTCTGGGCCCCCTGGTGCGGCCCCTGCA
AGACGCTTGGGCCACAGCTGGAAGCCGCCGTGACTGCCGCAAAAGGCAAGGTGCGGATGGTGAAGGTCAATGTGGACGAG
AACCAGCAAATCGCGGCACAGCTGCGGGTGCAGTCGATCCCCATGGTCTATGCCTTCGTCGATGGTCAGCCCATTGATGG
CTTCCAGGGCGCCGTGCCGGAAAGCCAGATCAAGGATTTTGTGACCAAGCTGGCCGCCATGTCCAAAGAGGATGGCGGCC
TCGCCGAGGCGTTGGAGGCCGCCGAGGAAATGCTGAGCATGGGGGAGCATGACGACGCCGCCCAGACTTTTGCTGCAATC
CTGGGTGAAGAGCCTGAGAATGCGGCCGCCATGGGTGGTCTCGCCCGCGCGCATCTGGCCATGGGACAAGTCGATGAGGC
GGAGCAATTGCTGTCCACCGCACCGGACGCGATTTTCAATGCGCCCGAGCTGGAAGCTGTTCGCGCCCAGATCGAGTTGG
CCCGCCAAGCCGAAAGTGCAGGCCCCCTGGCTGAATTGCAGGCCGCCGTGGATGCCAACCCCGATGATCACGCCGCGCGG
TTTGAGTTGGCCCAGGCGCTTCACGCAAACGGAGACGTGGAGCAGGCCGTGGATCAATTGCTGGAGCTGTTCCGCCGCGA
TCGCGAGTGGGAAGATGCCAAGGCCAAAACGCAGCTTTTCACCATTTTCGACGCGCTCCCGCCGCAAGATCCGATCGCGT
TAACTGGCCGTCGGAGACTCAGCTCGATGATATTTGCCTGA

Upstream 100 bases:

>100_bases
TCACGCCCCGGTTTTTGCGACTTTCGACCTCTGACCCTTGGCGAACGGCCCCGCGCCGCGCATATAGAGCGCAACACATG
CAAATGACGGAGCTTGCACC

Downstream 100 bases:

>100_bases
GACAAGGATCAGCCTACGTCCCTATCCATGATGACACACGCTGACCTCCCGGGGACGATCCCGATCTTTCCCCTGCCGGG
TGCGCTGATGCTGCCCCGCG

Product: thioredoxin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLELGQTPNAAPDAAPADLIKDTTDATFMADVVDASQTTPVIVDFWAPWCGPCKTLGPQLEAAVTAAKGKVRMVKVNVDE
NQQIAAQLRVQSIPMVYAFVDGQPIDGFQGAVPESQIKDFVTKLAAMSKEDGGLAEALEAAEEMLSMGEHDDAAQTFAAI
LGEEPENAAAMGGLARAHLAMGQVDEAEQLLSTAPDAIFNAPELEAVRAQIELARQAESAGPLAELQAAVDANPDDHAAR
FELAQALHANGDVEQAVDQLLELFRRDREWEDAKAKTQLFTIFDALPPQDPIALTGRRRLSSMIFA

Sequences:

>Translated_306_residues
MLELGQTPNAAPDAAPADLIKDTTDATFMADVVDASQTTPVIVDFWAPWCGPCKTLGPQLEAAVTAAKGKVRMVKVNVDE
NQQIAAQLRVQSIPMVYAFVDGQPIDGFQGAVPESQIKDFVTKLAAMSKEDGGLAEALEAAEEMLSMGEHDDAAQTFAAI
LGEEPENAAAMGGLARAHLAMGQVDEAEQLLSTAPDAIFNAPELEAVRAQIELARQAESAGPLAELQAAVDANPDDHAAR
FELAQALHANGDVEQAVDQLLELFRRDREWEDAKAKTQLFTIFDALPPQDPIALTGRRRLSSMIFA
>Mature_306_residues
MLELGQTPNAAPDAAPADLIKDTTDATFMADVVDASQTTPVIVDFWAPWCGPCKTLGPQLEAAVTAAKGKVRMVKVNVDE
NQQIAAQLRVQSIPMVYAFVDGQPIDGFQGAVPESQIKDFVTKLAAMSKEDGGLAEALEAAEEMLSMGEHDDAAQTFAAI
LGEEPENAAAMGGLARAHLAMGQVDEAEQLLSTAPDAIFNAPELEAVRAQIELARQAESAGPLAELQAAVDANPDDHAAR
FELAQALHANGDVEQAVDQLLELFRRDREWEDAKAKTQLFTIFDALPPQDPIALTGRRRLSSMIFA

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=132, Percent_Identity=37.1212121212121, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI21361657, Length=87, Percent_Identity=35.632183908046, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI87081747, Length=283, Percent_Identity=31.8021201413428, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1788936, Length=105, Percent_Identity=35.2380952380952, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082331, Length=105, Percent_Identity=35.2380952380952, Blast_Score=76, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI212646193, Length=99, Percent_Identity=41.4141414141414, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI28573567, Length=100, Percent_Identity=32, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24664269, Length=94, Percent_Identity=35.1063829787234, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 32702; Mature: 32702

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: PS50293 TPR_REGION ; PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELGQTPNAAPDAAPADLIKDTTDATFMADVVDASQTTPVIVDFWAPWCGPCKTLGPQL
CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCHHHCCCHH
EAAVTAAKGKVRMVKVNVDENQQIAAQLRVQSIPMVYAFVDGQPIDGFQGAVPESQIKDF
HHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHH
VTKLAAMSKEDGGLAEALEAAEEMLSMGEHDDAAQTFAAILGEEPENAAAMGGLARAHLA
HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
MGQVDEAEQLLSTAPDAIFNAPELEAVRAQIELARQAESAGPLAELQAAVDANPDDHAAR
HCCHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHH
FELAQALHANGDVEQAVDQLLELFRRDREWEDAKAKTQLFTIFDALPPQDPIALTGRRRL
HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHH
SSMIFA
HHHHCC
>Mature Secondary Structure
MLELGQTPNAAPDAAPADLIKDTTDATFMADVVDASQTTPVIVDFWAPWCGPCKTLGPQL
CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCHHHCCCHH
EAAVTAAKGKVRMVKVNVDENQQIAAQLRVQSIPMVYAFVDGQPIDGFQGAVPESQIKDF
HHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHH
VTKLAAMSKEDGGLAEALEAAEEMLSMGEHDDAAQTFAAILGEEPENAAAMGGLARAHLA
HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
MGQVDEAEQLLSTAPDAIFNAPELEAVRAQIELARQAESAGPLAELQAAVDANPDDHAAR
HCCHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHH
FELAQALHANGDVEQAVDQLLELFRRDREWEDAKAKTQLFTIFDALPPQDPIALTGRRRL
HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHH
SSMIFA
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]