Click here to switch to the map view.

The map label for this gene is crtI [H]

Identifier: 89052634

GI number: 89052634

Start: 133255

End: 134814

Strand: Reverse

Name: crtI [H]

Synonym: Jann_0143

Alternate gene names: 89052634

Gene position: 134814-133255 (Counterclockwise)

Preceding gene: 89052639

Following gene: 89052633

Centisome position: 3.12

GC content: 60.96

Gene sequence:

>1560_bases
ATGGACAGTTGTAAGGCGGAGCATCCAGTGATCAATCCCTCCAAGGCTATAGTGATCGGCGCGGGCCTGGGTGGCCTGTC
TGCGGCCATGCGACTTGGGGCTAAAGGGTATCAGGTGACGGTTCTCGACCGCCTTGATCGCGCTGGGGGGCGTGGATCGT
CTATCACGCAAAACGGCCACCGATTCGATTTGGGTCCGACGATTGTGACCGTACCGCAGGTGTTTGAGCAGCTCTGGGCC
GATTGCGGGCGCAGCTTTCGCGACGACGTCGATCTGCGCCCCGTCGATCCCTACTATGAGATCCGGTGGCGCGACGGCTC
CAAATTTCGGGTCAATGGTGATGACACGACGATGGAGGCGGAGGTTGCGAAGCTGTCGCCTTCCGACGTCGCCGGCTACC
GCAAGTTTCTGAACGATAGCGAGCGGCGGTATGAGTTCGGCTTTGAAGGCCTTGGCCGCCGTCCGATGAACAAGCTGATG
GATCTGGTGCGGGAGATTCCCGGCTTCGTGAAGTTGCGCGCCGACCGCTCCGTTTACGCCCATGCGAGCGCGCGGGTGAA
GGATGAACGCCTGCGTATGGCGCTGTCGTTCCACCCGCTCTTTATCGGCGGGGATCCCACGCGGGTCACCAGCATGTACA
GTCTCGTGAGCCATTTGGAGAAGGAGTTCGGCGTCCATTACGCGATGGGCGGCGTGCAGGCGATGGCCGACGCCATGGTG
CGTGTGATCGACGATCAGGGCGGCGAGGTCCGCCTTGGGGAAGATGTGACCGAGATCACGGTTGAACAGGGTCGAACAAC
CGGCGTCGTGACTGAAACCGGCGAAAGCCTAGCGTCCGATATCGTCGTCTCCAACGCTGATCCGGGCACAACATATGAAC
ATCTTTTGTCCAAGCAGACCAAGAGACGGTGGACGCCAAAACGGCTGAACAAGTCCCGGTGGTCCATGGGTCTGTTCGTC
TGGTATTTCGGGACCAAAGGCACCCGCGACAAATGGGGCGATGTGGGTCACCACACAATCCTGAACGGCCCGCGCTACAA
CGGTCTGCTCGATGACATCTTCATTCGCCGCAAGCTGGCCGATGACATGTCGATCTATCTGCACCGCCCCTCCATCACCG
ACCCCTCCGCAGCGCCCGCCGGGGACGACACCTTCTACGCCCTGTCGCCCGTGCCCAACCTGCATGGGAAAAGTGTCGAT
TGGACCGAGATGACGGAACGGTATCGCGCCAACATGGCCAGCGTGTTGAACGATCAGCTGCTGCCGGGCTTCGAGAATCA
CCTCAGCGCGTCCCACATCTTCACGCCGCAGACTTTTGTGGACCGATATCGGTCTCCCCACGGGGCGGGGTTCTCGCTTG
AGCCGCGGATATTCCAGTCTGCCTGGTTCCGTCCACACAACATCTCGGAGGAGATCGCGGGCCTGTATCTGGTCGGTGCA
GGTACGCATCCCGGTGCAGGTATTCCGTCCGTTGTGACCTCGTCTGAGGTTCTCAACAAACTGGTGCCCGCCGCAGAGAC
GCCAGTTATCCCCCCCATTCAGCGGGTGGCGGCGGAGTGA

Upstream 100 bases:

>100_bases
TGGTCGCTCCATGTGTCAACCAAGTCTGACACATTGGTCGCGGTTAGTGAAGTCAAATCACCTTTGCAAAACGCGAGATC
TCACCTTAGTGTCAACTAAT

Downstream 100 bases:

>100_bases
GCATGATCGACCCCGATGATATGGACCATTGTCGTCATGCGATCCGCGAAGGGTCGTATTCCTTCCACGCGGCATCGAAA
CTTCTGCCGTCTTCCGTGCG

Product: amine oxidase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 519; Mature: 519

Protein sequence:

>519_residues
MDSCKAEHPVINPSKAIVIGAGLGGLSAAMRLGAKGYQVTVLDRLDRAGGRGSSITQNGHRFDLGPTIVTVPQVFEQLWA
DCGRSFRDDVDLRPVDPYYEIRWRDGSKFRVNGDDTTMEAEVAKLSPSDVAGYRKFLNDSERRYEFGFEGLGRRPMNKLM
DLVREIPGFVKLRADRSVYAHASARVKDERLRMALSFHPLFIGGDPTRVTSMYSLVSHLEKEFGVHYAMGGVQAMADAMV
RVIDDQGGEVRLGEDVTEITVEQGRTTGVVTETGESLASDIVVSNADPGTTYEHLLSKQTKRRWTPKRLNKSRWSMGLFV
WYFGTKGTRDKWGDVGHHTILNGPRYNGLLDDIFIRRKLADDMSIYLHRPSITDPSAAPAGDDTFYALSPVPNLHGKSVD
WTEMTERYRANMASVLNDQLLPGFENHLSASHIFTPQTFVDRYRSPHGAGFSLEPRIFQSAWFRPHNISEEIAGLYLVGA
GTHPGAGIPSVVTSSEVLNKLVPAAETPVIPPIQRVAAE

Sequences:

>Translated_519_residues
MDSCKAEHPVINPSKAIVIGAGLGGLSAAMRLGAKGYQVTVLDRLDRAGGRGSSITQNGHRFDLGPTIVTVPQVFEQLWA
DCGRSFRDDVDLRPVDPYYEIRWRDGSKFRVNGDDTTMEAEVAKLSPSDVAGYRKFLNDSERRYEFGFEGLGRRPMNKLM
DLVREIPGFVKLRADRSVYAHASARVKDERLRMALSFHPLFIGGDPTRVTSMYSLVSHLEKEFGVHYAMGGVQAMADAMV
RVIDDQGGEVRLGEDVTEITVEQGRTTGVVTETGESLASDIVVSNADPGTTYEHLLSKQTKRRWTPKRLNKSRWSMGLFV
WYFGTKGTRDKWGDVGHHTILNGPRYNGLLDDIFIRRKLADDMSIYLHRPSITDPSAAPAGDDTFYALSPVPNLHGKSVD
WTEMTERYRANMASVLNDQLLPGFENHLSASHIFTPQTFVDRYRSPHGAGFSLEPRIFQSAWFRPHNISEEIAGLYLVGA
GTHPGAGIPSVVTSSEVLNKLVPAAETPVIPPIQRVAAE
>Mature_519_residues
MDSCKAEHPVINPSKAIVIGAGLGGLSAAMRLGAKGYQVTVLDRLDRAGGRGSSITQNGHRFDLGPTIVTVPQVFEQLWA
DCGRSFRDDVDLRPVDPYYEIRWRDGSKFRVNGDDTTMEAEVAKLSPSDVAGYRKFLNDSERRYEFGFEGLGRRPMNKLM
DLVREIPGFVKLRADRSVYAHASARVKDERLRMALSFHPLFIGGDPTRVTSMYSLVSHLEKEFGVHYAMGGVQAMADAMV
RVIDDQGGEVRLGEDVTEITVEQGRTTGVVTETGESLASDIVVSNADPGTTYEHLLSKQTKRRWTPKRLNKSRWSMGLFV
WYFGTKGTRDKWGDVGHHTILNGPRYNGLLDDIFIRRKLADDMSIYLHRPSITDPSAAPAGDDTFYALSPVPNLHGKSVD
WTEMTERYRANMASVLNDQLLPGFENHLSASHIFTPQTFVDRYRSPHGAGFSLEPRIFQSAWFRPHNISEEIAGLYLVGA
GTHPGAGIPSVVTSSEVLNKLVPAAETPVIPPIQRVAAE

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 57535; Mature: 57535

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: PS00982 PHYTOENE_DH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSCKAEHPVINPSKAIVIGAGLGGLSAAMRLGAKGYQVTVLDRLDRAGGRGSSITQNGH
CCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCCCC
RFDLGPTIVTVPQVFEQLWADCGRSFRDDVDLRPVDPYYEIRWRDGSKFRVNGDDTTMEA
EEECCCCEEEHHHHHHHHHHHHCCHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCEEH
EVAKLSPSDVAGYRKFLNDSERRYEFGFEGLGRRPMNKLMDLVREIPGFVKLRADRSVYA
HHHHCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEE
HASARVKDERLRMALSFHPLFIGGDPTRVTSMYSLVSHLEKEFGVHYAMGGVQAMADAMV
HHHHHHHHHHHHEEEEECEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
RVIDDQGGEVRLGEDVTEITVEQGRTTGVVTETGESLASDIVVSNADPGTTYEHLLSKQT
HHHCCCCCEEEECCCHHHHHHHCCCCCEEEECCCHHHHHHHEEECCCCCCHHHHHHHHHH
KRRWTPKRLNKSRWSMGLFVWYFGTKGTRDKWGDVGHHTILNGPRYNGLLDDIFIRRKLA
HHCCCHHHHCHHHCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHC
DDMSIYLHRPSITDPSAAPAGDDTFYALSPVPNLHGKSVDWTEMTERYRANMASVLNDQL
CCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
LPGFENHLSASHIFTPQTFVDRYRSPHGAGFSLEPRIFQSAWFRPHNISEEIAGLYLVGA
CCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCHHHCCEEEEEC
GTHPGAGIPSVVTSSEVLNKLVPAAETPVIPPIQRVAAE
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCC
>Mature Secondary Structure
MDSCKAEHPVINPSKAIVIGAGLGGLSAAMRLGAKGYQVTVLDRLDRAGGRGSSITQNGH
CCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCCCC
RFDLGPTIVTVPQVFEQLWADCGRSFRDDVDLRPVDPYYEIRWRDGSKFRVNGDDTTMEA
EEECCCCEEEHHHHHHHHHHHHCCHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCEEH
EVAKLSPSDVAGYRKFLNDSERRYEFGFEGLGRRPMNKLMDLVREIPGFVKLRADRSVYA
HHHHCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEE
HASARVKDERLRMALSFHPLFIGGDPTRVTSMYSLVSHLEKEFGVHYAMGGVQAMADAMV
HHHHHHHHHHHHEEEEECEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
RVIDDQGGEVRLGEDVTEITVEQGRTTGVVTETGESLASDIVVSNADPGTTYEHLLSKQT
HHHCCCCCEEEECCCHHHHHHHCCCCCEEEECCCHHHHHHHEEECCCCCCHHHHHHHHHH
KRRWTPKRLNKSRWSMGLFVWYFGTKGTRDKWGDVGHHTILNGPRYNGLLDDIFIRRKLA
HHCCCHHHHCHHHCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHC
DDMSIYLHRPSITDPSAAPAGDDTFYALSPVPNLHGKSVDWTEMTERYRANMASVLNDQL
CCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
LPGFENHLSASHIFTPQTFVDRYRSPHGAGFSLEPRIFQSAWFRPHNISEEIAGLYLVGA
CCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCHHHCCEEEEEC
GTHPGAGIPSVVTSSEVLNKLVPAAETPVIPPIQRVAAE
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8021167; 7721699; 10648776 [H]