| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89052533
Identifier: 89052533
GI number: 89052533
Start: 40821
End: 41201
Strand: Reverse
Name: 89052533
Synonym: Jann_0042
Alternate gene names: NA
Gene position: 41201-40821 (Counterclockwise)
Preceding gene: 89052534
Following gene: 89052532
Centisome position: 0.95
GC content: 59.84
Gene sequence:
>381_bases ATGTCCTTTTCAAGCAAAGCCATTTTCACTGCACTTACCCTGTCTCTTTTGCCTGTAGCCGCCTCTGCGCAGATCTTCGT CTCCCCGGCAGCACCTGGTGCGGGGGGATCCTACATCAACGGTGTCGCAATCCCCGGACATCTCCAAGGCGGCGTGCAGG TCCTGCCAGGCCAAGGGCCCATCGGCGGACCTGTCCAGGTCCAGGGCTGTGGCGCCGCGCAGTACCAGTCTCTCATTGGC CATCACCAAAGTGCGGTGCCGATGCCATCCCATGCGGCCATCGTCCATCCCGGCATGATCCGTACGACCCAATACATCGC GACGCGCCTCAACGTGTCGTTGACTCAGAACGGCTATGTAGATCGCGTCTATTGCGGTTAA
Upstream 100 bases:
>100_bases GGTCGCTTGCGGGTAGGGGATTCCAGCGGTGATCGGTGCGGCGCGGTAGGGTAGGCTTGTGTCATATTCAAAGCCCTTCT CATTCCGGAGTCCCCTTCAG
Downstream 100 bases:
>100_bases TCGCCAAGCGTCGCGGGCGGCCTTGCGCCGCTTCGTGATTCCCCCTATATCCACATCAACAGCGGCGCCGACACTTCGGC TCCACCGACACACTCAGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 126; Mature: 125
Protein sequence:
>126_residues MSFSSKAIFTALTLSLLPVAASAQIFVSPAAPGAGGSYINGVAIPGHLQGGVQVLPGQGPIGGPVQVQGCGAAQYQSLIG HHQSAVPMPSHAAIVHPGMIRTTQYIATRLNVSLTQNGYVDRVYCG
Sequences:
>Translated_126_residues MSFSSKAIFTALTLSLLPVAASAQIFVSPAAPGAGGSYINGVAIPGHLQGGVQVLPGQGPIGGPVQVQGCGAAQYQSLIG HHQSAVPMPSHAAIVHPGMIRTTQYIATRLNVSLTQNGYVDRVYCG >Mature_125_residues SFSSKAIFTALTLSLLPVAASAQIFVSPAAPGAGGSYINGVAIPGHLQGGVQVLPGQGPIGGPVQVQGCGAAQYQSLIGH HQSAVPMPSHAAIVHPGMIRTTQYIATRLNVSLTQNGYVDRVYCG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12823; Mature: 12692
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFSSKAIFTALTLSLLPVAASAQIFVSPAAPGAGGSYINGVAIPGHLQGGVQVLPGQGP CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEECCEECCCCCCCCCEEECCCCC IGGPVQVQGCGAAQYQSLIGHHQSAVPMPSHAAIVHPGMIRTTQYIATRLNVSLTQNGYV CCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHEEEEEEECCCCE DRVYCG EEEECC >Mature Secondary Structure SFSSKAIFTALTLSLLPVAASAQIFVSPAAPGAGGSYINGVAIPGHLQGGVQVLPGQGP CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEECCEECCCCCCCCCEEECCCCC IGGPVQVQGCGAAQYQSLIGHHQSAVPMPSHAAIVHPGMIRTTQYIATRLNVSLTQNGYV CCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHEEEEEEECCCCE DRVYCG EEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA