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The map label for this gene is rimP

Identifier: 89052532

GI number: 89052532

Start: 40091

End: 40675

Strand: Reverse

Name: rimP

Synonym: Jann_0041

Alternate gene names: 89052532

Gene position: 40675-40091 (Counterclockwise)

Preceding gene: 89052533

Following gene: 89052531

Centisome position: 0.94

GC content: 60.17

Gene sequence:

>585_bases
ATGTCTGACCTGATCGCCAAAACCTCCATGGACCGCCGGATGGCGGAAATCGTCACGCCCTCGATCGAGGCGCTGGGGTT
TGAGGTCGTGCGCATCCGGGTGATGGGGGGCAAGACCAACACCCTGCAAATCATGGCAGAGCGCCCAGATGGTGGCATCG
ACGTGGATGAATGCGCCCAGATCTCCAACGCGATCTCGGTCCTGCTGGACGTGGAGGACCCGCTTGAGGATGCCTACGCG
CTGGAAGTTTCCAGCCCCGGCATCGACCGGCCCCTGACGCGGCTGAAGGATTTTGAGACGTTCGAGGGCTATGAAGCCAA
GCTGGAAACGACCGAAATGATTGGCGGTCAGCGCCGCTTCAAGGGCGTGCTGGCGGGCGTGGAAGACGACGAAGTTCTGG
TCAATCTGGAGCAGGGCTCGGAGACGGTGACCGTCGGCCTCAATTTCGACTGGCTCAGCGATGCCAAGCTGGTCCTGACC
GACGAGCTGATCAAGGAAATGCTGAAGCAACGCAAGGACGCGGGGCTGATCAACGAGACACAATTTGACGACATCGAGGA
AGATCCCTCGAACCCGGAGGACTAA

Upstream 100 bases:

>100_bases
TATATCCACATCAACAGCGGCGCCGACACTTCGGCTCCACCGACACACTCAGGCGGGCCGCACGGCTCGCTTTTTTGTTT
TAAGGACCCCTCACCACCGC

Downstream 100 bases:

>100_bases
GCATATGGCCATCACGTCAGCCAACCAGCTGGAGCTTTTGCAAACCGCAGAAGCCGTTGCCCGCGAAAAGATGATCGACC
CCAATCTGGTGGTCGAGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MSDLIAKTSMDRRMAEIVTPSIEALGFEVVRIRVMGGKTNTLQIMAERPDGGIDVDECAQISNAISVLLDVEDPLEDAYA
LEVSSPGIDRPLTRLKDFETFEGYEAKLETTEMIGGQRRFKGVLAGVEDDEVLVNLEQGSETVTVGLNFDWLSDAKLVLT
DELIKEMLKQRKDAGLINETQFDDIEEDPSNPED

Sequences:

>Translated_194_residues
MSDLIAKTSMDRRMAEIVTPSIEALGFEVVRIRVMGGKTNTLQIMAERPDGGIDVDECAQISNAISVLLDVEDPLEDAYA
LEVSSPGIDRPLTRLKDFETFEGYEAKLETTEMIGGQRRFKGVLAGVEDDEVLVNLEQGSETVTVGLNFDWLSDAKLVLT
DELIKEMLKQRKDAGLINETQFDDIEEDPSNPED
>Mature_193_residues
SDLIAKTSMDRRMAEIVTPSIEALGFEVVRIRVMGGKTNTLQIMAERPDGGIDVDECAQISNAISVLLDVEDPLEDAYAL
EVSSPGIDRPLTRLKDFETFEGYEAKLETTEMIGGQRRFKGVLAGVEDDEVLVNLEQGSETVTVGLNFDWLSDAKLVLTD
ELIKEMLKQRKDAGLINETQFDDIEEDPSNPED

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=130, Percent_Identity=40.7692307692308, Blast_Score=108, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_JANSC (Q28WF4)

Other databases:

- EMBL:   CP000264
- RefSeq:   YP_507983.1
- ProteinModelPortal:   Q28WF4
- SMR:   Q28WF4
- STRING:   Q28WF4
- GeneID:   3932477
- GenomeReviews:   CP000264_GR
- KEGG:   jan:Jann_0041
- eggNOG:   COG0779
- HOGENOM:   HBG668072
- OMA:   CTVQIMA
- PhylomeDB:   Q28WF4
- ProtClustDB:   PRK00092
- BioCyc:   JSP290400:JANN_0041-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 21512; Mature: 21381

Theoretical pI: Translated: 3.92; Mature: 3.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLIAKTSMDRRMAEIVTPSIEALGFEVVRIRVMGGKTNTLQIMAERPDGGIDVDECAQ
CCCHHHHHHHHHHHHHHHCCCHHHCCEEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHH
ISNAISVLLDVEDPLEDAYALEVSSPGIDRPLTRLKDFETFEGYEAKLETTEMIGGQRRF
HHHHHEEEEECCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEHHHHHHCCHHHH
KGVLAGVEDDEVLVNLEQGSETVTVGLNFDWLSDAKLVLTDELIKEMLKQRKDAGLINET
HHHHCCCCCCEEEEEEECCCEEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCC
QFDDIEEDPSNPED
CCCCCCCCCCCCCC
>Mature Secondary Structure 
SDLIAKTSMDRRMAEIVTPSIEALGFEVVRIRVMGGKTNTLQIMAERPDGGIDVDECAQ
CCHHHHHHHHHHHHHHHCCCHHHCCEEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHH
ISNAISVLLDVEDPLEDAYALEVSSPGIDRPLTRLKDFETFEGYEAKLETTEMIGGQRRF
HHHHHEEEEECCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEHHHHHHCCHHHH
KGVLAGVEDDEVLVNLEQGSETVTVGLNFDWLSDAKLVLTDELIKEMLKQRKDAGLINET
HHHHCCCCCCEEEEEEECCCEEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCC
QFDDIEEDPSNPED
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA