Click here to switch to the map view.

The map label for this gene is omp-1X [H]

Identifier: 88658577

GI number: 88658577

Start: 1152319

End: 1153146

Strand: Direct

Name: omp-1X [H]

Synonym: ECH_1130

Alternate gene names: 88658577

Gene position: 1152319-1153146 (Clockwise)

Preceding gene: 88658106

Following gene: 88658357

Centisome position: 97.97

GC content: 32.25

Gene sequence:

>828_bases
ATGAGTAAAAAAAATTTTATTACAATAGGAGCAACACTTATTCATATGTTGTTACCTAACATATCTTTTCCAGAAACTAT
TAACAATAACACTGATAAACTTTCTGGGTTATATATAAGTGGGCAATATAAACCAGGGATTTCTCATTTCAGCAAATTTT
CAGTCAAAGAAATCTATAATGATAACATTCAACTAATTGGGTTAAGACACAACGCAATTTCTACTAGTACCCTTAATATT
AATACAGATTTTAATATCCCCTATAAAGTAACATTTCAAAATAACATTACCAGCTTTAGTGGAGCTATTGGTTATTCTGA
TCCCACAGGGGCAAGATTTGAGCTTGAAGGTTCTTATGAAGAATTTGATGTGACAGATCCTGGAGACTGCTTAATAAAAG
ATACCTATAGATATTTCGCTTTAGCTAGAAACCCATCAGGTTCTAGCCCTACCTCAAACAACTATACTGTTATGAGAAAT
GATGGTGTTTCCATTACTTCTGTTATATTTAATGGCTGTTATGACATCTTTTTAAAGGATTTAGAAGTATCACCTTATGT
ATGTGTTGGTGTAGGTGGAGATTTTATAGAATTTTTTGACGCATTACACATTAAATTAGCATACCAAGGCAAGTTAGGTA
TCAATTATCACTTATCGACTCAAGCAAGCGTATTTATTGATGGATATTATCATAAGGTTATAGGAAATCAATTCAACAAT
CTAAATGTTCAACACGTGGCTAGTACAGATTTTGGACCTGTATACGCAGTAGCCACACTTAACATTGGTTATTTTGGTGG
TGAAATCGGAATTAGACTTACATTTTAA

Upstream 100 bases:

>100_bases
GTCTTAACAGTCATCCTAAGTCTACTTTTGCAGTAGCTACTCTTAATGTTGAGTATTTCGGTAGTGAATTTGGGTTAAAA
TTTATATTTTAAGGAGTTTT

Downstream 100 bases:

>100_bases
AGGAATATTATGAATAATAGAAAAAGTTTTTTTATAATAGGTGCATCATTACTAGCAAGCTTATTATTCACATCTGAGGC
CTCTTCTACAGGAAATGTAA

Product: major outer membrane protein OMP-1X

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MSKKNFITIGATLIHMLLPNISFPETINNNTDKLSGLYISGQYKPGISHFSKFSVKEIYNDNIQLIGLRHNAISTSTLNI
NTDFNIPYKVTFQNNITSFSGAIGYSDPTGARFELEGSYEEFDVTDPGDCLIKDTYRYFALARNPSGSSPTSNNYTVMRN
DGVSITSVIFNGCYDIFLKDLEVSPYVCVGVGGDFIEFFDALHIKLAYQGKLGINYHLSTQASVFIDGYYHKVIGNQFNN
LNVQHVASTDFGPVYAVATLNIGYFGGEIGIRLTF

Sequences:

>Translated_275_residues
MSKKNFITIGATLIHMLLPNISFPETINNNTDKLSGLYISGQYKPGISHFSKFSVKEIYNDNIQLIGLRHNAISTSTLNI
NTDFNIPYKVTFQNNITSFSGAIGYSDPTGARFELEGSYEEFDVTDPGDCLIKDTYRYFALARNPSGSSPTSNNYTVMRN
DGVSITSVIFNGCYDIFLKDLEVSPYVCVGVGGDFIEFFDALHIKLAYQGKLGINYHLSTQASVFIDGYYHKVIGNQFNN
LNVQHVASTDFGPVYAVATLNIGYFGGEIGIRLTF
>Mature_274_residues
SKKNFITIGATLIHMLLPNISFPETINNNTDKLSGLYISGQYKPGISHFSKFSVKEIYNDNIQLIGLRHNAISTSTLNIN
TDFNIPYKVTFQNNITSFSGAIGYSDPTGARFELEGSYEEFDVTDPGDCLIKDTYRYFALARNPSGSSPTSNNYTVMRND
GVSITSVIFNGCYDIFLKDLEVSPYVCVGVGGDFIEFFDALHIKLAYQGKLGINYHLSTQASVFIDGYYHKVIGNQFNNL
NVQHVASTDFGPVYAVATLNIGYFGGEIGIRLTF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 30477; Mature: 30345

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKNFITIGATLIHMLLPNISFPETINNNTDKLSGLYISGQYKPGISHFSKFSVKEIYN
CCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHC
DNIQLIGLRHNAISTSTLNINTDFNIPYKVTFQNNITSFSGAIGYSDPTGARFELEGSYE
CCEEEEEEECCCEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCC
EFDVTDPGDCLIKDTYRYFALARNPSGSSPTSNNYTVMRNDGVSITSVIFNGCYDIFLKD
EECCCCCCCEEEEECEEEEEEEECCCCCCCCCCCEEEEECCCCEEHHHHHHHHHEEEEEE
LEVSPYVCVGVGGDFIEFFDALHIKLAYQGKLGINYHLSTQASVFIDGYYHKVIGNQFNN
CCCCCEEEEECCCHHHHHHHEEEEEEEEECCEEEEEEECCCEEEEEECEEEEHHCCCCCC
LNVQHVASTDFGPVYAVATLNIGYFGGEIGIRLTF
CCEEEEECCCCCCEEEEEEEEEEEECCEEEEEEEC
>Mature Secondary Structure 
SKKNFITIGATLIHMLLPNISFPETINNNTDKLSGLYISGQYKPGISHFSKFSVKEIYN
CCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHC
DNIQLIGLRHNAISTSTLNINTDFNIPYKVTFQNNITSFSGAIGYSDPTGARFELEGSYE
CCEEEEEEECCCEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCC
EFDVTDPGDCLIKDTYRYFALARNPSGSSPTSNNYTVMRNDGVSITSVIFNGCYDIFLKD
EECCCCCCCEEEEECEEEEEEEECCCCCCCCCCCEEEEECCCCEEHHHHHHHHHEEEEEE
LEVSPYVCVGVGGDFIEFFDALHIKLAYQGKLGINYHLSTQASVFIDGYYHKVIGNQFNN
CCCCCEEEEECCCHHHHHHHEEEEEEEEECCEEEEEEECCCEEEEEECEEEEHHCCCCCC
LNVQHVASTDFGPVYAVATLNIGYFGGEIGIRLTF
CCEEEEECCCCCCEEEEEEEEEEEECCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]