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The map label for this gene is omp-1Y [H]

Identifier: 88658357

GI number: 88658357

Start: 1153156

End: 1154013

Strand: Direct

Name: omp-1Y [H]

Synonym: ECH_1131

Alternate gene names: 88658357

Gene position: 1153156-1154013 (Clockwise)

Preceding gene: 88658577

Following gene: 88657920

Centisome position: 98.04

GC content: 34.15

Gene sequence:

>858_bases
ATGAATAATAGAAAAAGTTTTTTTATAATAGGTGCATCATTACTAGCAAGCTTATTATTCACATCTGAGGCCTCTTCTAC
AGGAAATGTAAGTAACCATACTTATTTTAAACCTAGGTTATATATCAGTGGACAATATAGACCAGGAGTTTCTCATTTTA
GCAAATTTTCAGTCAAAGAAACCAACTACAATACTACTCAACTAGTTGGGCTTAAAAAGGACATCAGTGTCATAGGGAAC
AGTAATATCACAACCTACACAAATTTCAACTTTCCTTACATTGCAGAATTTCAAGACAATGCCATAAGTTTCAGTGGGGC
AATTGGATACTTGTATTCCGAGAATTTTAGAATTGAAGTAGAGGCTTCTTATGAAGAATTTGATGTTAAAAATCCAGAAG
GATCTGCTACAGACGCATACAGGTATTTTGCACTAGCACGTGCTATGGATGGCACTAATAAATCTAGTCCTGATGACACA
AGAAAATTCACTGTCATGAGAAATGACGGGTTATCAATTTCATCAGTAATGATAAATGGGTGTTACAATTTTACATTAGA
TGATATACCAGTAGTACCGTATGTATGCGCAGGAATAGGAGGAGATTTCATAGAGTTTTTTAATGATTTACATGTTAAGT
TTGCTCATCAAGGCAAGGTAGGTATTAGTTATTCTATATCCCCTGAAGTAAGTTTATTTCTTAACGGATATTACCATAAA
GTAACAGGTAACAGATTTAAAAACTTACACGTTCAACACGTAAGTGATTTAAGTGACGCTCCTAAGTTCACATCTGCAGT
TGCTACACTCAATGTTGGGTACTTTGGTGGCGAAATTGGAGTAAGATTTATATTTTAA

Upstream 100 bases:

>100_bases
GGCTAGTACAGATTTTGGACCTGTATACGCAGTAGCCACACTTAACATTGGTTATTTTGGTGGTGAAATCGGAATTAGAC
TTACATTTTAAAGGAATATT

Downstream 100 bases:

>100_bases
TTATAACTAAATACGGAAGATCTAATGAATAAAAAAAACAAGTTTATTATAGCTACAGCATTGGTATATTTACTGTCATT
ACCTAGTGTATCGTTTTCAG

Product: major outer membrane protein OMP-1Y

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MNNRKSFFIIGASLLASLLFTSEASSTGNVSNHTYFKPRLYISGQYRPGVSHFSKFSVKETNYNTTQLVGLKKDISVIGN
SNITTYTNFNFPYIAEFQDNAISFSGAIGYLYSENFRIEVEASYEEFDVKNPEGSATDAYRYFALARAMDGTNKSSPDDT
RKFTVMRNDGLSISSVMINGCYNFTLDDIPVVPYVCAGIGGDFIEFFNDLHVKFAHQGKVGISYSISPEVSLFLNGYYHK
VTGNRFKNLHVQHVSDLSDAPKFTSAVATLNVGYFGGEIGVRFIF

Sequences:

>Translated_285_residues
MNNRKSFFIIGASLLASLLFTSEASSTGNVSNHTYFKPRLYISGQYRPGVSHFSKFSVKETNYNTTQLVGLKKDISVIGN
SNITTYTNFNFPYIAEFQDNAISFSGAIGYLYSENFRIEVEASYEEFDVKNPEGSATDAYRYFALARAMDGTNKSSPDDT
RKFTVMRNDGLSISSVMINGCYNFTLDDIPVVPYVCAGIGGDFIEFFNDLHVKFAHQGKVGISYSISPEVSLFLNGYYHK
VTGNRFKNLHVQHVSDLSDAPKFTSAVATLNVGYFGGEIGVRFIF
>Mature_285_residues
MNNRKSFFIIGASLLASLLFTSEASSTGNVSNHTYFKPRLYISGQYRPGVSHFSKFSVKETNYNTTQLVGLKKDISVIGN
SNITTYTNFNFPYIAEFQDNAISFSGAIGYLYSENFRIEVEASYEEFDVKNPEGSATDAYRYFALARAMDGTNKSSPDDT
RKFTVMRNDGLSISSVMINGCYNFTLDDIPVVPYVCAGIGGDFIEFFNDLHVKFAHQGKVGISYSISPEVSLFLNGYYHK
VTGNRFKNLHVQHVSDLSDAPKFTSAVATLNVGYFGGEIGVRFIF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 31712; Mature: 31712

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNRKSFFIIGASLLASLLFTSEASSTGNVSNHTYFKPRLYISGQYRPGVSHFSKFSVKE
CCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHEEEEEE
TNYNTTQLVGLKKDISVIGNSNITTYTNFNFPYIAEFQDNAISFSGAIGYLYSENFRIEV
CCCCCEEEEEECCCEEEECCCCEEEEEECCCCEEEEECCCEEEECCEEEEEEECCEEEEE
EASYEEFDVKNPEGSATDAYRYFALARAMDGTNKSSPDDTRKFTVMRNDGLSISSVMING
EECHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCEEEEEEEEC
CYNFTLDDIPVVPYVCAGIGGDFIEFFNDLHVKFAHQGKVGISYSISPEVSLFLNGYYHK
EEECCCCCCCCHHHHHHCCCHHHHHHHHHCEEEEEECCCEEEEEECCCCEEEEEECEEEE
VTGNRFKNLHVQHVSDLSDAPKFTSAVATLNVGYFGGEIGVRFIF
ECCCCCCEEEEEHHHCCCCCCCHHHEEEEEEEEEECCCEEEEEEC
>Mature Secondary Structure
MNNRKSFFIIGASLLASLLFTSEASSTGNVSNHTYFKPRLYISGQYRPGVSHFSKFSVKE
CCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHEEEEEE
TNYNTTQLVGLKKDISVIGNSNITTYTNFNFPYIAEFQDNAISFSGAIGYLYSENFRIEV
CCCCCEEEEEECCCEEEECCCCEEEEEECCCCEEEEECCCEEEECCEEEEEEECCEEEEE
EASYEEFDVKNPEGSATDAYRYFALARAMDGTNKSSPDDTRKFTVMRNDGLSISSVMING
EECHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCEEEEEEEEC
CYNFTLDDIPVVPYVCAGIGGDFIEFFNDLHVKFAHQGKVGISYSISPEVSLFLNGYYHK
EEECCCCCCCCHHHHHHCCCHHHHHHHHHCEEEEEECCCEEEEEECCCCEEEEEECEEEE
VTGNRFKNLHVQHVSDLSDAPKFTSAVATLNVGYFGGEIGVRFIF
ECCCCCCEEEEEHHHCCCCCCCHHHEEEEEEEEEECCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]