Click here to switch to the map view.

The map label for this gene is omp-1w [H]

Identifier: 88658106

GI number: 88658106

Start: 1151459

End: 1152310

Strand: Direct

Name: omp-1w [H]

Synonym: ECH_1129

Alternate gene names: 88658106

Gene position: 1151459-1152310 (Clockwise)

Preceding gene: 88658368

Following gene: 88658577

Centisome position: 97.89

GC content: 30.05

Gene sequence:

>852_bases
ATGAGTGCTAAAAAAAAGCTTTTTATAATAGGGTCAGTGTTAGTATGTTTAGTGTCATACTTACCTACTAAATCTTTGTC
AAACTTAAATAATATTAATAATAACACTAAGTGCACTGGGCTATATGTCAGTGGACAATATAAACCTACTGTTTCTCACT
TTAGTAATTTTTCACTTAAAGAAACTTATACTGACACTAAAGAGTTATTAGGACTAGCAAAAGATATTAAGTCTATTACA
GATATAACAACAAATAAAAAATTCAACATTCCTTATAACACAAAATTTCAAGATAATGCTGTTAGCTTCAGTGCAGCTGT
TGGATATATTTCCCAAGACAGTCCAAGGGTTGAGGTAGAATGGTCTTATGAAGAATTTGACGTTAAAAATCCTGGTAATT
ACGTAGTAAGTGAAGCCTTCAGGTATATTGCTTTAGCAAGAGGAATTGATAATCTTCAAAAATATCCTGAAACAAATAAG
TATGTTGTTATAAAGAACAATGGCTTATCTGTCGCATCCATTATAATCAATGGCTGTTATGATTTTTCTTTAAACAATTT
AAAAGTATCACCTTACATATGCGTAGGGTTTGGTGGGGACATTATAGAATTTTTTAGTGCTGTAAGTTTTAAATTTGCTT
ATCAAGGTAAGGTAGGTATCAGTTATCCATTATTCTCTAATATGATTATATTTGCTGACGGATATTACCATAAGGTCATA
GGAAATAAATTTAACAATTTAAATGTTCAACACGTTGTTAGTCTTAACAGTCATCCTAAGTCTACTTTTGCAGTAGCTAC
TCTTAATGTTGAGTATTTCGGTAGTGAATTTGGGTTAAAATTTATATTTTAA

Upstream 100 bases:

>100_bases
CATAATAAAAATACTCTCGTAATAATACCAATACCTAATGCTAGAGAGTTCAGTAATGAAATTCGAGTAAGGAATATATC
AATAAATAAGGAAAGTTCTT

Downstream 100 bases:

>100_bases
GGAGTTTTATGAGTAAAAAAAATTTTATTACAATAGGAGCAACACTTATTCATATGTTGTTACCTAACATATCTTTTCCA
GAAACTATTAACAATAACAC

Product: major outer membrane protein OMP-1W

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSAKKKLFIIGSVLVCLVSYLPTKSLSNLNNINNNTKCTGLYVSGQYKPTVSHFSNFSLKETYTDTKELLGLAKDIKSIT
DITTNKKFNIPYNTKFQDNAVSFSAAVGYISQDSPRVEVEWSYEEFDVKNPGNYVVSEAFRYIALARGIDNLQKYPETNK
YVVIKNNGLSVASIIINGCYDFSLNNLKVSPYICVGFGGDIIEFFSAVSFKFAYQGKVGISYPLFSNMIIFADGYYHKVI
GNKFNNLNVQHVVSLNSHPKSTFAVATLNVEYFGSEFGLKFIF

Sequences:

>Translated_283_residues
MSAKKKLFIIGSVLVCLVSYLPTKSLSNLNNINNNTKCTGLYVSGQYKPTVSHFSNFSLKETYTDTKELLGLAKDIKSIT
DITTNKKFNIPYNTKFQDNAVSFSAAVGYISQDSPRVEVEWSYEEFDVKNPGNYVVSEAFRYIALARGIDNLQKYPETNK
YVVIKNNGLSVASIIINGCYDFSLNNLKVSPYICVGFGGDIIEFFSAVSFKFAYQGKVGISYPLFSNMIIFADGYYHKVI
GNKFNNLNVQHVVSLNSHPKSTFAVATLNVEYFGSEFGLKFIF
>Mature_282_residues
SAKKKLFIIGSVLVCLVSYLPTKSLSNLNNINNNTKCTGLYVSGQYKPTVSHFSNFSLKETYTDTKELLGLAKDIKSITD
ITTNKKFNIPYNTKFQDNAVSFSAAVGYISQDSPRVEVEWSYEEFDVKNPGNYVVSEAFRYIALARGIDNLQKYPETNKY
VVIKNNGLSVASIIINGCYDFSLNNLKVSPYICVGFGGDIIEFFSAVSFKFAYQGKVGISYPLFSNMIIFADGYYHKVIG
NKFNNLNVQHVVSLNSHPKSTFAVATLNVEYFGSEFGLKFIF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 31662; Mature: 31531

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAKKKLFIIGSVLVCLVSYLPTKSLSNLNNINNNTKCTGLYVSGQYKPTVSHFSNFSLK
CCCCCEEEEHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEEEECCCCCHHHHCCCCCCH
ETYTDTKELLGLAKDIKSITDITTNKKFNIPYNTKFQDNAVSFSAAVGYISQDSPRVEVE
HHHCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEHEEEEECCCCCEEEEE
WSYEEFDVKNPGNYVVSEAFRYIALARGIDNLQKYPETNKYVVIKNNGLSVASIIINGCY
ECHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEEECCCCEEEEEEEECCE
DFSLNNLKVSPYICVGFGGDIIEFFSAVSFKFAYQGKVGISYPLFSNMIIFADGYYHKVI
ECCCCCEEECCEEEEECCCHHHHHHHHHEEEEEECCCCCEECHHHCCEEEEECCEEEHHH
GNKFNNLNVQHVVSLNSHPKSTFAVATLNVEYFGSEFGLKFIF
CCCCCCCCEEEEEEECCCCCCEEEEEEEEEEEECCCCCEEEEC
>Mature Secondary Structure 
SAKKKLFIIGSVLVCLVSYLPTKSLSNLNNINNNTKCTGLYVSGQYKPTVSHFSNFSLK
CCCCEEEEHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEEEECCCCCHHHHCCCCCCH
ETYTDTKELLGLAKDIKSITDITTNKKFNIPYNTKFQDNAVSFSAAVGYISQDSPRVEVE
HHHCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEHEEEEECCCCCEEEEE
WSYEEFDVKNPGNYVVSEAFRYIALARGIDNLQKYPETNKYVVIKNNGLSVASIIINGCY
ECHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEEECCCCEEEEEEEECCE
DFSLNNLKVSPYICVGFGGDIIEFFSAVSFKFAYQGKVGISYPLFSNMIIFADGYYHKVI
ECCCCCEEECCEEEEECCCHHHHHHHHHEEEEEECCCCCEECHHHCCEEEEECCEEEHHH
GNKFNNLNVQHVVSLNSHPKSTFAVATLNVEYFGSEFGLKFIF
CCCCCCCCEEEEEEECCCCCCEEEEEEEEEEEECCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]