Click here to switch to the map view.

The map label for this gene is yebC [C]

Identifier: 88608408

GI number: 88608408

Start: 560830

End: 561567

Strand: Direct

Name: yebC [C]

Synonym: NSE_0641

Alternate gene names: 88608408

Gene position: 560830-561567 (Clockwise)

Preceding gene: 88608036

Following gene: 88608101

Centisome position: 65.29

GC content: 45.66

Gene sequence:

>738_bases
ATGGCTGGTCATTCTCAGTATGCCAATATAAAGCATAGGAAAAACGCTCAAGATGCGAAGCGGGCAAGGAAGTTTACCAA
GTTGAGAAGAGAGATTCTCGTTGCAGCGCGTTCTGGCCTTCCAGATCCTGAATTTAACCCGCGTTTGCGGTCCGCTCTTG
CAAATGCACGGCGTTTTGGCCTTCCGAAGGATAAAATCGAGTCTGCGATTAAGAGTTCAACTGACAAAACGGAAGGTGAT
TATCAAGAAGTGTGCTATATGGCTGCTAGTTCTGGTGGCATGTGGCCTAGTGGTTTTGCAGTCGTTGTGACTGCACTGAC
GGATAATAAGAACAGGACTGCCTCGAATGTTAAGCATATTCTTTCTAAATCTGGTTTGGTTTTAGCCGACGTTTCTTTTA
TGTTTGAGAGTTTCGGGGTTTTTTCGTACCCGAAATCTACAGATTTCGACAAGCTAATGGAGGTCGCTCTTGAAGCTAGC
GCATTGGACATTAAGACTGAAAAGAACCACTTTGATGTCTATTGTAGCAGGGAGAGTTTCGCTGCAACTTCCTTAGAACT
GAGAAAGAAGCTCGGAGAGTATGAACATTCGGGACTGGTATGGAGGGCAAAGACACATCAAGAAGTACCGCCTGAGGTGC
ACGTCCGTTTAGAAAAATTGGTAGATGCTCTCGAGGAAGATGACGATGTCCAGCGCGTCTACACTTCCATACTCACAGAG
CGGCAATCAGAGAAATAA

Upstream 100 bases:

>100_bases
GAAAGAGTGAAGTTCACTATAAGCAGTGTTGTGAAAGGTGATCTCAGGTCTGGAAGTTAGTTTTAGCTATCTTGCATCCA
GATAGTGTCTCATCTGAGTT

Downstream 100 bases:

>100_bases
ATCAAGTAGGGCAACCCTGAATAATAAAATGGGGGCGCTGATACGTCACATGAATGAGACACCTGAACCAACCCCATCCA
GAACGAAGACTACCTGGATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MAGHSQYANIKHRKNAQDAKRARKFTKLRREILVAARSGLPDPEFNPRLRSALANARRFGLPKDKIESAIKSSTDKTEGD
YQEVCYMAASSGGMWPSGFAVVVTALTDNKNRTASNVKHILSKSGLVLADVSFMFESFGVFSYPKSTDFDKLMEVALEAS
ALDIKTEKNHFDVYCSRESFAATSLELRKKLGEYEHSGLVWRAKTHQEVPPEVHVRLEKLVDALEEDDDVQRVYTSILTE
RQSEK

Sequences:

>Translated_245_residues
MAGHSQYANIKHRKNAQDAKRARKFTKLRREILVAARSGLPDPEFNPRLRSALANARRFGLPKDKIESAIKSSTDKTEGD
YQEVCYMAASSGGMWPSGFAVVVTALTDNKNRTASNVKHILSKSGLVLADVSFMFESFGVFSYPKSTDFDKLMEVALEAS
ALDIKTEKNHFDVYCSRESFAATSLELRKKLGEYEHSGLVWRAKTHQEVPPEVHVRLEKLVDALEEDDDVQRVYTSILTE
RQSEK
>Mature_244_residues
AGHSQYANIKHRKNAQDAKRARKFTKLRREILVAARSGLPDPEFNPRLRSALANARRFGLPKDKIESAIKSSTDKTEGDY
QEVCYMAASSGGMWPSGFAVVVTALTDNKNRTASNVKHILSKSGLVLADVSFMFESFGVFSYPKSTDFDKLMEVALEASA
LDIKTEKNHFDVYCSRESFAATSLELRKKLGEYEHSGLVWRAKTHQEVPPEVHVRLEKLVDALEEDDDVQRVYTSILTER
QSEK

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=257, Percent_Identity=30.3501945525292, Blast_Score=96, Evalue=4e-20,
Organism=Escherichia coli, GI1788171, Length=239, Percent_Identity=36.8200836820084, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1788294, Length=238, Percent_Identity=33.6134453781513, Blast_Score=121, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI17556100, Length=248, Percent_Identity=25.8064516129032, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6321458, Length=264, Percent_Identity=29.1666666666667, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24583305, Length=252, Percent_Identity=24.6031746031746, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y641_NEOSM (Q2GDC7)

Other databases:

- EMBL:   CP000237
- RefSeq:   YP_506519.1
- ProteinModelPortal:   Q2GDC7
- SMR:   Q2GDC7
- STRING:   Q2GDC7
- GeneID:   3932037
- GenomeReviews:   CP000237_GR
- KEGG:   nse:NSE_0641
- TIGR:   NSE_0641
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- ProtClustDB:   PRK00110
- BioCyc:   NSEN222891:NSE_0641-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 27590; Mature: 27459

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSQYANIKHRKNAQDAKRARKFTKLRREILVAARSGLPDPEFNPRLRSALANARRFG
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
LPKDKIESAIKSSTDKTEGDYQEVCYMAASSGGMWPSGFAVVVTALTDNKNRTASNVKHI
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHH
LSKSGLVLADVSFMFESFGVFSYPKSTDFDKLMEVALEASALDIKTEKNHFDVYCSRESF
HHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCEEEEECCCHH
AATSLELRKKLGEYEHSGLVWRAKTHQEVPPEVHVRLEKLVDALEEDDDVQRVYTSILTE
HHHHHHHHHHHCCHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RQSEK
HCCCC
>Mature Secondary Structure 
AGHSQYANIKHRKNAQDAKRARKFTKLRREILVAARSGLPDPEFNPRLRSALANARRFG
CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
LPKDKIESAIKSSTDKTEGDYQEVCYMAASSGGMWPSGFAVVVTALTDNKNRTASNVKHI
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHH
LSKSGLVLADVSFMFESFGVFSYPKSTDFDKLMEVALEASALDIKTEKNHFDVYCSRESF
HHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCEEEEECCCHH
AATSLELRKKLGEYEHSGLVWRAKTHQEVPPEVHVRLEKLVDALEEDDDVQRVYTSILTE
HHHHHHHHHHHCCHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RQSEK
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA