Click here to switch to the map view.

The map label for this gene is hup

Identifier: 88608036

GI number: 88608036

Start: 560508

End: 560789

Strand: Direct

Name: hup

Synonym: NSE_0640

Alternate gene names: 88608036

Gene position: 560508-560789 (Clockwise)

Preceding gene: 88608139

Following gene: 88608408

Centisome position: 65.25

GC content: 40.43

Gene sequence:

>282_bases
GTGAAAAATGTTGACTTGATCAATGTTGTTGCTGAAGGTGCTTCGATTTCTAAAGGCCATGCCAAGCGTGCTATAAACGC
ATTGTATGAGTACATATATGAATCGCTCAAACGCAGGAAGTCTATTAGAATTCCAAAGATTGGAACTCTCTCAGTGGTTA
AGAAAAAAGCAACTACTTATTGTGACCCTAAGACCAAGCAGATGGTGAGGCAAGCTGAAACTGAAAGAGTGAAGTTCACT
ATAAGCAGTGTTGTGAAAGGTGATCTCAGGTCTGGAAGTTAG

Upstream 100 bases:

>100_bases
GTTGCGCCTCGATATTCGCATTTCCTCTTGATTTATTCGGGTTTATATCATAATCTGCAGTTTTGATTGTTTCAGAGAGC
TTTTGATGACAAAAGAAGTA

Downstream 100 bases:

>100_bases
TTTTAGCTATCTTGCATCCAGATAGTGTCTCATCTGAGTTATGGCTGGTCATTCTCAGTATGCCAATATAAAGCATAGGA
AAAACGCTCAAGATGCGAAG

Product: DNA-binding protein HU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MKNVDLINVVAEGASISKGHAKRAINALYEYIYESLKRRKSIRIPKIGTLSVVKKKATTYCDPKTKQMVRQAETERVKFT
ISSVVKGDLRSGS

Sequences:

>Translated_93_residues
MKNVDLINVVAEGASISKGHAKRAINALYEYIYESLKRRKSIRIPKIGTLSVVKKKATTYCDPKTKQMVRQAETERVKFT
ISSVVKGDLRSGS
>Mature_93_residues
MKNVDLINVVAEGASISKGHAKRAINALYEYIYESLKRRKSIRIPKIGTLSVVKKKATTYCDPKTKQMVRQAETERVKFT
ISSVVKGDLRSGS

Specific function: Histone-Like DNA-Binding Protein Which Is Capable Of Wrapping DNA To Stabilize It, And Thus To Prevent Its Denaturation Under Extreme Environmental Conditions. [C]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10400; Mature: 10400

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNVDLINVVAEGASISKGHAKRAINALYEYIYESLKRRKSIRIPKIGTLSVVKKKATTY
CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
CDPKTKQMVRQAETERVKFTISSVVKGDLRSGS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKNVDLINVVAEGASISKGHAKRAINALYEYIYESLKRRKSIRIPKIGTLSVVKKKATTY
CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
CDPKTKQMVRQAETERVKFTISSVVKGDLRSGS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA