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The map label for this gene is rpiB

Identifier: 88608285

GI number: 88608285

Start: 183158

End: 183616

Strand: Direct

Name: rpiB

Synonym: NSE_0217

Alternate gene names: 88608285

Gene position: 183158-183616 (Clockwise)

Preceding gene: 88608710

Following gene: 88608618

Centisome position: 21.32

GC content: 43.57

Gene sequence:

>459_bases
TTGAACGTGAGGGTTTCCATAGGTGCTGATCATGCGGGGTTTGCACTCAAAGCAGTTTTGATAGACTTCTTTAGGGCACG
GGGATGCTTGCCCGTGGATAGGGGTGCGTATTGCTTAGATGTTTCTGATTATCCTGATTTTGCTAAATCTGTTTCCTTAG
ACGTATCGGATGGGAGGGTGGATTTTGGCATCTTAATATGTGGTTCTGGTATCGGGATGAGTATAACCGCCAACAGGTAT
AAAAAGGTCCGGGCTGCTCTGTGTTATGATGTGCGAGCAGCAAAGATGGCTAGGGAACATAATGATGCAAATGTCTTATG
TCTTGCAGGAAGAGATCTGACTGTATCAAGGTGTCTTGAAATAGTTGAGGCATTTGTAAGTAGTAAGTTTAGTTGTGAGG
AGCGTCACAAGAAAAGGATAGAAAAAATTGATGAGGGGGGGGGGAATAGTGTTTTTTAA

Upstream 100 bases:

>100_bases
GTACTGCGTTATGATATTCATGACTTGCGAAGCCTTTATTCAAACGATTTGAGGTGGAAGGTAAGCTGATCGTGGTGTTT
TTACTGTAAGGTGATTTTGC

Downstream 100 bases:

>100_bases
ATCTAGGATTTCTGCGGTTGATCCGGCTGTTGCTAGGATTATTGATGGTGAAGTTAGTAGACAGCGTAAACATCTGCAGT
TGATTGCTTCCGAGAACTTT

Product: ribose 5-phosphate isomerase B

Products: NA

Alternate protein names: Phosphoriboisomerase B [H]

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MNVRVSIGADHAGFALKAVLIDFFRARGCLPVDRGAYCLDVSDYPDFAKSVSLDVSDGRVDFGILICGSGIGMSITANRY
KKVRAALCYDVRAAKMAREHNDANVLCLAGRDLTVSRCLEIVEAFVSSKFSCEERHKKRIEKIDEGGGNSVF

Sequences:

>Translated_152_residues
MNVRVSIGADHAGFALKAVLIDFFRARGCLPVDRGAYCLDVSDYPDFAKSVSLDVSDGRVDFGILICGSGIGMSITANRY
KKVRAALCYDVRAAKMAREHNDANVLCLAGRDLTVSRCLEIVEAFVSSKFSCEERHKKRIEKIDEGGGNSVF
>Mature_152_residues
MNVRVSIGADHAGFALKAVLIDFFRARGCLPVDRGAYCLDVSDYPDFAKSVSLDVSDGRVDFGILICGSGIGMSITANRY
KKVRAALCYDVRAAKMAREHNDANVLCLAGRDLTVSRCLEIVEAFVSSKFSCEERHKKRIEKIDEGGGNSVF

Specific function: In addition to its activity on D-ribose 5-phosphate it probably also has activity on D-allose 6-phosphate [H]

COG id: COG0698

COG function: function code G; Ribose 5-phosphate isomerase RpiB

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lacAB/rpiB family [H]

Homologues:

Organism=Escherichia coli, GI1790528, Length=140, Percent_Identity=37.8571428571429, Blast_Score=117, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003500
- InterPro:   IPR004785 [H]

Pfam domain/function: PF02502 LacAB_rpiB [H]

EC number: =5.3.1.6 [H]

Molecular weight: Translated: 16600; Mature: 16600

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
4.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVRVSIGADHAGFALKAVLIDFFRARGCLPVDRGAYCLDVSDYPDFAKSVSLDVSDGRV
CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCCEEEECCCCCCHHHHEEEECCCCCE
DFGILICGSGIGMSITANRYKKVRAALCYDVRAAKMAREHNDANVLCLAGRDLTVSRCLE
EEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
IVEAFVSSKFSCEERHKKRIEKIDEGGGNSVF
HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNVRVSIGADHAGFALKAVLIDFFRARGCLPVDRGAYCLDVSDYPDFAKSVSLDVSDGRV
CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCCEEEECCCCCCHHHHEEEECCCCCE
DFGILICGSGIGMSITANRYKKVRAALCYDVRAAKMAREHNDANVLCLAGRDLTVSRCLE
EEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
IVEAFVSSKFSCEERHKKRIEKIDEGGGNSVF
HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8576032; 7610040; 9278503; 1840580; 7984428; 9401019 [H]