Click here to switch to the map view.

The map label for this gene is 88608081

Identifier: 88608081

GI number: 88608081

Start: 428596

End: 429180

Strand: Reverse

Name: 88608081

Synonym: NSE_0508

Alternate gene names: NA

Gene position: 429180-428596 (Counterclockwise)

Preceding gene: 88608688

Following gene: 88608827

Centisome position: 49.96

GC content: 37.44

Gene sequence:

>585_bases
ATGGCATACAAAATAAGGAAGCGGATGGAAGAAATCGGCATCAATGCAAGAGAACTCGCTGAGAGAGCAGGGGTCGGAAA
GTCATTCGTATACGACATATTGAATGGTAAGTCAAAAAATCCTACTTCAAAAAAGCTTAATTCCATTTCAAGGGAATTAG
GTATTTCGATTTCCTATCTCATAAATGTATCCCCAGACTCAATAGATTACGAGAATTATCTACCCGTGCATAGCCTAGAC
AATCAGCTTGGTGTTAGTTTTCTCTTTAACAGGACCTTTTGCGAGGAACATATAAGCGAAACAAGTAAACTATACTCCTG
CACTATGTATGACGATAGTATGTTGCCAAGCATAATGCCGAATGAGATCCTGATAATAAAAAAATTTATTCAGGGCGATA
GAATGAAGTCCGGGGTCTTTCTTATACGCGATAAGTTCAACAGTATAGTACGAAGCGTTGAACATATTTTTGGAAGCCAA
GACGTTAAGATAACCCCGGATAATGAGAAATACTCAACCTATATCAAACACTTTGATGAAATTGACATAATAGGCAAAGT
AATCTTTACACTCAGGAGATTGTAA

Upstream 100 bases:

>100_bases
AAAAAGATTGTGCACAATTTTAAATTGTGATACATCCACGGTATATTTTTTTGATTGAGCAGCAGACATGACAAAAATCG
CTGACCAGATGACAAATGTA

Downstream 100 bases:

>100_bases
CACTTTAGGTTTCTTATAGAACAGTCTGACTGCTCTGTAAGAAACAAAATTTATGAGTAGTATGCTGAGGTTATTTTTTT
TCTTCGTTGCAATTTTGTAC

Product: DNA-binding protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MAYKIRKRMEEIGINARELAERAGVGKSFVYDILNGKSKNPTSKKLNSISRELGISISYLINVSPDSIDYENYLPVHSLD
NQLGVSFLFNRTFCEEHISETSKLYSCTMYDDSMLPSIMPNEILIIKKFIQGDRMKSGVFLIRDKFNSIVRSVEHIFGSQ
DVKITPDNEKYSTYIKHFDEIDIIGKVIFTLRRL

Sequences:

>Translated_194_residues
MAYKIRKRMEEIGINARELAERAGVGKSFVYDILNGKSKNPTSKKLNSISRELGISISYLINVSPDSIDYENYLPVHSLD
NQLGVSFLFNRTFCEEHISETSKLYSCTMYDDSMLPSIMPNEILIIKKFIQGDRMKSGVFLIRDKFNSIVRSVEHIFGSQ
DVKITPDNEKYSTYIKHFDEIDIIGKVIFTLRRL
>Mature_193_residues
AYKIRKRMEEIGINARELAERAGVGKSFVYDILNGKSKNPTSKKLNSISRELGISISYLINVSPDSIDYENYLPVHSLDN
QLGVSFLFNRTFCEEHISETSKLYSCTMYDDSMLPSIMPNEILIIKKFIQGDRMKSGVFLIRDKFNSIVRSVEHIFGSQD
VKITPDNEKYSTYIKHFDEIDIIGKVIFTLRRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22347; Mature: 22216

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYKIRKRMEEIGINARELAERAGVGKSFVYDILNGKSKNPTSKKLNSISRELGISISYL
CCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEE
INVSPDSIDYENYLPVHSLDNQLGVSFLFNRTFCEEHISETSKLYSCTMYDDSMLPSIMP
EECCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCC
NEILIIKKFIQGDRMKSGVFLIRDKFNSIVRSVEHIFGSQDVKITPDNEKYSTYIKHFDE
CHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHH
IDIIGKVIFTLRRL
HHHHHHHHHHHHCC
>Mature Secondary Structure 
AYKIRKRMEEIGINARELAERAGVGKSFVYDILNGKSKNPTSKKLNSISRELGISISYL
CHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEE
INVSPDSIDYENYLPVHSLDNQLGVSFLFNRTFCEEHISETSKLYSCTMYDDSMLPSIMP
EECCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCC
NEILIIKKFIQGDRMKSGVFLIRDKFNSIVRSVEHIFGSQDVKITPDNEKYSTYIKHFDE
CHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHH
IDIIGKVIFTLRRL
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA