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The map label for this gene is 88607990

Identifier: 88607990

GI number: 88607990

Start: 647332

End: 649038

Strand: Direct

Name: 88607990

Synonym: NSE_0725

Alternate gene names: NA

Gene position: 647332-649038 (Clockwise)

Preceding gene: 88608369

Following gene: 88608460

Centisome position: 75.36

GC content: 36.97

Gene sequence:

>1707_bases
GTGTTGAGTCTAACAATTAAAGTGATTGTATCTAGCCCGAATTGGTTGCCTATGAAAAATTTGATCCCGTTTTTTTTAGT
CGTTATTGCTTTTTTCGCTTTTTCTGATTGTTACGCTGCCTCACCAACCAAGAAGGAAATATTAGAATTTCTAAAACTAC
AGAATAAAGATCACAACGTTGTGTTGGATTTTAAGGAGCGCTTTGGTGATAGACTGACAAATGTTGATTTCTCTGGACTG
GATCTTGGTAAAGTAACGTTCGATGGAATGATAATAGAGAACTCTTCTTTCGATCGTGCAGTTTTCACAAGTCTTACAAT
CAAAAATAGCGTCGTAAATAACTCTACTTTTTACAGTACAATTATCTACAAAGGACATATCGTAAGCAGCCAGTTGGATG
GCGTGTCTATTATCGAATCGGATTTAAACAACACACAAATAGAAAAATCTGAGCTAAAAAATGTCAGAATTCTGAAGACA
CATGCTCCCTCGCTTATACTCGATGATAGCAAGCTAAACAGCATCATAATCAGAAACTCCGATATTTTGGAGGCCAAATT
TGGAAGAACCGTCCTTGCTGAAAGTGAAATTTCTGGAAGTGATCTCTCCAATATGAGAATGGAAGATTCGAAAATTACCG
ATTCTCGACTAACGGTCTCAAAGCTCATAAATGCAAAGATGTCCAAGAGTACGCTTACAAACAGCACCTTACACGGAATA
GAATTATCAGGTTCTCACATGCGTGATACTCAGATATTTTCCTCAGAGATAACTAACTCTGACCTTCATCGAAGTAGACT
GTACAACTGTCATTTAGAGAAAGTAAGCATGCTAAACACCGATTTTGGCTATGCATCAGTTGAAGGTACCTCATTTATCA
AAGCCGACTTCTCCTCGGCATCTTTAGAGGGATTACATATAGGAAGCGCAACTTTTTCAGAATGCTGTTTGTGTAACTTC
AGCTCACAAAACATTACGATCGATTCATCAGCAATAACCCATTCGTCTATAAGCAATGTAAAATTGTATGACAGCGAAAT
TGCAGATACCTCGCTAAAAGATTCTAGTATTGCAAATCTTAGTATCTCTAACTCAGGGTTTCTTGATACCGTACTTTTGG
ACGTCAATGGCAAGAGTATTGCAATCAAGCATACGCAAATAGATTCTTTGCTTCTCCAAGGGGATTTTTCAGATATAACA
ATAGAGGACTCACAGATCGTGAAGAGTTCTTTAAGGAATCTCAAATTACAACTGCTGTGGCTGCTGCATTCTCATATAAA
CAACACGCAGGTCCAAGATGGCACGATATCTAAAAGCAATTTCTTAGCTAATACCTTTATAGACAGCTCAGTGGACAATT
TAACGATCGCCAAATCAAGTTTCACTGAAAACAATTTTGTTGGAACAAATGTAGGAAATATTTCATTTACAAAGACACTT
TTCACAGAAAAATTTATAGAGGGCGTTTCTTCCAAACTCGCCCAAATGGGAGCAATTGTCGGATTGTCGAATTTTGAAAA
GCTCATTGCAAGTGGAACGTATGATTTCACAGATGTAAACTACTCAAATATCGACTTCAGTAAAATTGATTTGGGAAAGG
TAAATTTCAAGGGAGCAATATTAAGGGAAAACATTTTTAGTGAAAATAAACTACACGATGTAGACCTTACGAAAGCTGAT
CTAGAAGGAAGTACCTTCCATAAATAA

Upstream 100 bases:

>100_bases
TTTAACACCTCTGACATTCACTACAACATGTTGCCTGCGTTGTGTATTACGGCTGTAGTAATGCTAGCCTCGTCCTGTAT
AACTGGACGCACGGTGAAAT

Downstream 100 bases:

>100_bases
ATGTTAACTCAAAGGAAGATTGCGCATGCGGAAGGGAATTCTGTTTATAATCTCCTCCCCTTCTGGTGGAGGAAAAACGA
CAGTAGCGGATTTCTTGGTC

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: Pentapeptide Repeat Protein; Pentapeptide Repeat Domain Protein; Leucine Rich Repeat Domain Protein; RDD Domain-Containing Protein

Number of amino acids: Translated: 568; Mature: 568

Protein sequence:

>568_residues
MLSLTIKVIVSSPNWLPMKNLIPFFLVVIAFFAFSDCYAASPTKKEILEFLKLQNKDHNVVLDFKERFGDRLTNVDFSGL
DLGKVTFDGMIIENSSFDRAVFTSLTIKNSVVNNSTFYSTIIYKGHIVSSQLDGVSIIESDLNNTQIEKSELKNVRILKT
HAPSLILDDSKLNSIIIRNSDILEAKFGRTVLAESEISGSDLSNMRMEDSKITDSRLTVSKLINAKMSKSTLTNSTLHGI
ELSGSHMRDTQIFSSEITNSDLHRSRLYNCHLEKVSMLNTDFGYASVEGTSFIKADFSSASLEGLHIGSATFSECCLCNF
SSQNITIDSSAITHSSISNVKLYDSEIADTSLKDSSIANLSISNSGFLDTVLLDVNGKSIAIKHTQIDSLLLQGDFSDIT
IEDSQIVKSSLRNLKLQLLWLLHSHINNTQVQDGTISKSNFLANTFIDSSVDNLTIAKSSFTENNFVGTNVGNISFTKTL
FTEKFIEGVSSKLAQMGAIVGLSNFEKLIASGTYDFTDVNYSNIDFSKIDLGKVNFKGAILRENIFSENKLHDVDLTKAD
LEGSTFHK

Sequences:

>Translated_568_residues
MLSLTIKVIVSSPNWLPMKNLIPFFLVVIAFFAFSDCYAASPTKKEILEFLKLQNKDHNVVLDFKERFGDRLTNVDFSGL
DLGKVTFDGMIIENSSFDRAVFTSLTIKNSVVNNSTFYSTIIYKGHIVSSQLDGVSIIESDLNNTQIEKSELKNVRILKT
HAPSLILDDSKLNSIIIRNSDILEAKFGRTVLAESEISGSDLSNMRMEDSKITDSRLTVSKLINAKMSKSTLTNSTLHGI
ELSGSHMRDTQIFSSEITNSDLHRSRLYNCHLEKVSMLNTDFGYASVEGTSFIKADFSSASLEGLHIGSATFSECCLCNF
SSQNITIDSSAITHSSISNVKLYDSEIADTSLKDSSIANLSISNSGFLDTVLLDVNGKSIAIKHTQIDSLLLQGDFSDIT
IEDSQIVKSSLRNLKLQLLWLLHSHINNTQVQDGTISKSNFLANTFIDSSVDNLTIAKSSFTENNFVGTNVGNISFTKTL
FTEKFIEGVSSKLAQMGAIVGLSNFEKLIASGTYDFTDVNYSNIDFSKIDLGKVNFKGAILRENIFSENKLHDVDLTKAD
LEGSTFHK
>Mature_568_residues
MLSLTIKVIVSSPNWLPMKNLIPFFLVVIAFFAFSDCYAASPTKKEILEFLKLQNKDHNVVLDFKERFGDRLTNVDFSGL
DLGKVTFDGMIIENSSFDRAVFTSLTIKNSVVNNSTFYSTIIYKGHIVSSQLDGVSIIESDLNNTQIEKSELKNVRILKT
HAPSLILDDSKLNSIIIRNSDILEAKFGRTVLAESEISGSDLSNMRMEDSKITDSRLTVSKLINAKMSKSTLTNSTLHGI
ELSGSHMRDTQIFSSEITNSDLHRSRLYNCHLEKVSMLNTDFGYASVEGTSFIKADFSSASLEGLHIGSATFSECCLCNF
SSQNITIDSSAITHSSISNVKLYDSEIADTSLKDSSIANLSISNSGFLDTVLLDVNGKSIAIKHTQIDSLLLQGDFSDIT
IEDSQIVKSSLRNLKLQLLWLLHSHINNTQVQDGTISKSNFLANTFIDSSVDNLTIAKSSFTENNFVGTNVGNISFTKTL
FTEKFIEGVSSKLAQMGAIVGLSNFEKLIASGTYDFTDVNYSNIDFSKIDLGKVNFKGAILRENIFSENKLHDVDLTKAD
LEGSTFHK

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62700; Mature: 62700

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLTIKVIVSSPNWLPMKNLIPFFLVVIAFFAFSDCYAASPTKKEILEFLKLQNKDHNV
CEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCE
VLDFKERFGDRLTNVDFSGLDLGKVTFDGMIIENSSFDRAVFTSLTIKNSVVNNSTFYST
EEEEHHHCCCHHCCCCCCCCEECCEEECCEEEECCCCCCCHHEEEEEEHHHCCCCEEEEE
IIYKGHIVSSQLDGVSIIESDLNNTQIEKSELKNVRILKTHAPSLILDDSKLNSIIIRNS
EEEECEEECCCCCCCCEEHHCCCCCEECHHHCCCEEEEEECCCEEEEECCCCCEEEEECC
DILEAKFGRTVLAESEISGSDLSNMRMEDSKITDSRLTVSKLINAKMSKSTLTNSTLHGI
CEEHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEE
ELSGSHMRDTQIFSSEITNSDLHRSRLYNCHLEKVSMLNTDFGYASVEGTSFIKADFSSA
EECCCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHEECCCCCEEECCCCEEEEECCCCC
SLEGLHIGSATFSECCLCNFSSQNITIDSSAITHSSISNVKLYDSEIADTSLKDSSIANL
CCCEEEECCCCHHHHEEEECCCCCEEEECCCCCCCCCCCEEEECCHHCCCCCCCCCEEEE
SISNSGFLDTVLLDVNGKSIAIKHTQIDSLLLQGDFSDITIEDSQIVKSSLRNLKLQLLW
EECCCCCEEEEEEEECCCEEEEEEEEECEEEEECCCCCEEECHHHHHHHHHHHHHHHHHH
LLHSHINNTQVQDGTISKSNFLANTFIDSSVDNLTIAKSSFTENNFVGTNVGNISFTKTL
HHHHHCCCCCCCCCCCCCCCEEEHHHHCCCCCCEEEEECCCCCCCEEECCCCCEEEHHHH
FTEKFIEGVSSKLAQMGAIVGLSNFEKLIASGTYDFTDVNYSNIDFSKIDLGKVNFKGAI
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCEE
LRENIFSENKLHDVDLTKADLEGSTFHK
HHHHHCCCCCEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MLSLTIKVIVSSPNWLPMKNLIPFFLVVIAFFAFSDCYAASPTKKEILEFLKLQNKDHNV
CEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCE
VLDFKERFGDRLTNVDFSGLDLGKVTFDGMIIENSSFDRAVFTSLTIKNSVVNNSTFYST
EEEEHHHCCCHHCCCCCCCCEECCEEECCEEEECCCCCCCHHEEEEEEHHHCCCCEEEEE
IIYKGHIVSSQLDGVSIIESDLNNTQIEKSELKNVRILKTHAPSLILDDSKLNSIIIRNS
EEEECEEECCCCCCCCEEHHCCCCCEECHHHCCCEEEEEECCCEEEEECCCCCEEEEECC
DILEAKFGRTVLAESEISGSDLSNMRMEDSKITDSRLTVSKLINAKMSKSTLTNSTLHGI
CEEHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEE
ELSGSHMRDTQIFSSEITNSDLHRSRLYNCHLEKVSMLNTDFGYASVEGTSFIKADFSSA
EECCCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHEECCCCCEEECCCCEEEEECCCCC
SLEGLHIGSATFSECCLCNFSSQNITIDSSAITHSSISNVKLYDSEIADTSLKDSSIANL
CCCEEEECCCCHHHHEEEECCCCCEEEECCCCCCCCCCCEEEECCHHCCCCCCCCCEEEE
SISNSGFLDTVLLDVNGKSIAIKHTQIDSLLLQGDFSDITIEDSQIVKSSLRNLKLQLLW
EECCCCCEEEEEEEECCCEEEEEEEEECEEEEECCCCCEEECHHHHHHHHHHHHHHHHHH
LLHSHINNTQVQDGTISKSNFLANTFIDSSVDNLTIAKSSFTENNFVGTNVGNISFTKTL
HHHHHCCCCCCCCCCCCCCCEEEHHHHCCCCCCEEEEECCCCCCCEEECCCCCEEEHHHH
FTEKFIEGVSSKLAQMGAIVGLSNFEKLIASGTYDFTDVNYSNIDFSKIDLGKVNFKGAI
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCEE
LRENIFSENKLHDVDLTKADLEGSTFHK
HHHHHCCCCCEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA