| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is bfrD [H]
Identifier: 87201292
GI number: 87201292
Start: 3499265
End: 3501388
Strand: Direct
Name: bfrD [H]
Synonym: Saro_3280
Alternate gene names: 87201292
Gene position: 3499265-3501388 (Clockwise)
Preceding gene: 87201290
Following gene: 87201295
Centisome position: 98.25
GC content: 65.87
Gene sequence:
>2124_bases ATGATTATCGTGAACAAGGGGACTACCGTGAACCGCATCGCCTGCCTGCTCCTCGCCGGAACCACGCTTGCGCCCGCCAG CGCCTTCGCCGTCGAGGCCGTGCCAGCGGATGCCGCCTTCGATGCCGAGACGGCAGGTACGGTGATCGTGGTGACGGGCA GCGCCGACGGCTATCGCCCGGTAGACGCCAACGCGGTCAAGACGCCCACCCCGCTGGTCGACGTGCCCCAGACGATCACC GTGCTGACGCGCGAACAGCTCGACGACCAGGCCGTGACCCAGCTTGGCGATGCGCTGCGCTATGTTCCCGGCGTCGTGCT GGGCCAGGGCGAGGGCCACCGCGACCAGATCACCCTGCGCGGCCAGAACACCACCGCTGACTTCTACCTCGATGGCCTGC GCGACGACACGCAGTACTACCGCTCGCTCTACAACATCGAGCGCGTCGAAGTGCTGAAGGGCGCCAATGCCCTGCTCTTC GGTCGCGGCGGCGGCGGCGGCGTGATCAACCGCGTGAGCAAGACCCCCGACCTCGACCGCACCAAGGGCGAGGCGAGCGC GAATGTCGACAGCTTCGGCGCCTTCGCGCTGGCCGCGGACTGGAACCAGCCGCTTGCCGAAAGCGTCGGCGGCCGCCTGA ATGCGACCTACGAGGAGTTCGACAACCACCGGCAGGATTTCGAGGGCCGCTTCATCGGCGTGAACCCCACCCTGGCGTTC GAGCCGGGCGAGGCGACGCGCGTCGAGCTGTCCTACAACTATGACGACGACCGCCGCACCACGGACCGCGGCGTGCCTTC GGTGGCAGCCACGAAAAAGCCGCTCACCGGCCATGACGACACGTTCTTCGGCCGCAACGACGTCAACATCGCCACGGTGA AGGCGCACATCGCGCAGGCGCGCATCGACCACGACCTTGCCGACGGGCTCAGCTTCAATGTGCTTGGCCAGTACAGCCAT ACCGACAAGTACTACGGCAATGTCTTCGCCGGCAGTTCGGTGAACGACGCGGGCCAGCTCACCCTCTCGGGCTATTCCAG CGCAAACGTCCGCGAAAGCTGGGTCGGCCAGACCAACCTCGTCTGGGAAGGCCACACCGGCCCCATCGGCCACACCGTGC TTGCCGGGCTCGAGATTTCGAGCCAGGACACCACCAGCCTGCGCTCCGACCCGGACTTCGGCACTGCGAGCACCACGGTG ACGCTGGCGAAGCGGATGACGATTCCGGCGGTGACGTTCAAGGCGCCTTCGCGCTCGTCGCTGAGCCGCGTCGATACCTG GTCGGCATATTTCCAGGACCAGGTCGAGCTGGCCTCCTTCCTCCAGGTCGTTGCGGGCATCCGCTTCGACGAATTCCGCA TCAATTCGACCGACCGCATCAATGCAACTTCCGCGCAGCGCACCGACCGCAAGTGGTCGCCGCGCTTCGGCGTGGTGCTC AAGCCGCGCAAGGAGATGTCGTTCTACGCCAGCTTCACCCGCAGCTTCCTGCCGCAATCCGGCGATCAGTTCGGGTCGCT CGACGCAACCCAGGCGACGCTCGCGCCCGAGCGTTTCGAGAACCTGGAAGCAGGCGTAAAGTGGGACATCAACCCCGGCC TTGCCTTCACTGCCGCAGCCTACCGCCTCGACCGCGAGAACTCGCGCTTCAACAATCCAGTGACGGGCCTGCCCGAGCTT TCGGGCAAGACCCGGGCCAAGGGCATCGAACTGCAACTGGCGGGACGCGTGCTGCCCGACTGGCAGGTCAGCCTCGGCTA CACGTTGCAGGACGGAGAAGTCCGGTCGCGCACCACGGCAGCGCTGCCGGGTACCAAGCTGGCCCAGCTTCCGCGCCACC AGTTCGCCGCCTGGACGCGCTATGACGTAACCAGGCAGCTTGGCCTCGGCCTTGGCGTGACGCACCAGTCGAAGAGCTTT GCGACGATCAGCAACGCGGTGACGCTACCTGCCTTCACCCGCGTGGACGCGGCGGTGTTCTACGACCTGTCCGAACGCTT CTCGATCCAGCTCAATGTCGAGAACCTGACCGACACCGACTATTTCCCCTCGGCCCACACCGACAACAACATCTCGACCG GCGAGCCGATCAACGCCCGCCTTTCGGTTCGCGTGAAATTCTGA
Upstream 100 bases:
>100_bases CGCTACGCACCGCGCATTGCGCGAGATCAATGTTATTGCGAAAAATTCTCAAAAATCTCCTTGCAAGTGCGATTGAGTCG CAATACTCGCCCTCTTGCGA
Downstream 100 bases:
>100_bases CCCCCCGGGCGCCCTCTCCCTCCCCCCTCCCGGGAGGGGGCGCCAACCTTCTTGCGCCGTCCTGCCTTCCTGACGGCAGC CGGTTCAACCCGCTCCCGGC
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]
Number of amino acids: Translated: 707; Mature: 707
Protein sequence:
>707_residues MIIVNKGTTVNRIACLLLAGTTLAPASAFAVEAVPADAAFDAETAGTVIVVTGSADGYRPVDANAVKTPTPLVDVPQTIT VLTREQLDDQAVTQLGDALRYVPGVVLGQGEGHRDQITLRGQNTTADFYLDGLRDDTQYYRSLYNIERVEVLKGANALLF GRGGGGGVINRVSKTPDLDRTKGEASANVDSFGAFALAADWNQPLAESVGGRLNATYEEFDNHRQDFEGRFIGVNPTLAF EPGEATRVELSYNYDDDRRTTDRGVPSVAATKKPLTGHDDTFFGRNDVNIATVKAHIAQARIDHDLADGLSFNVLGQYSH TDKYYGNVFAGSSVNDAGQLTLSGYSSANVRESWVGQTNLVWEGHTGPIGHTVLAGLEISSQDTTSLRSDPDFGTASTTV TLAKRMTIPAVTFKAPSRSSLSRVDTWSAYFQDQVELASFLQVVAGIRFDEFRINSTDRINATSAQRTDRKWSPRFGVVL KPRKEMSFYASFTRSFLPQSGDQFGSLDATQATLAPERFENLEAGVKWDINPGLAFTAAAYRLDRENSRFNNPVTGLPEL SGKTRAKGIELQLAGRVLPDWQVSLGYTLQDGEVRSRTTAALPGTKLAQLPRHQFAAWTRYDVTRQLGLGLGVTHQSKSF ATISNAVTLPAFTRVDAAVFYDLSERFSIQLNVENLTDTDYFPSAHTDNNISTGEPINARLSVRVKF
Sequences:
>Translated_707_residues MIIVNKGTTVNRIACLLLAGTTLAPASAFAVEAVPADAAFDAETAGTVIVVTGSADGYRPVDANAVKTPTPLVDVPQTIT VLTREQLDDQAVTQLGDALRYVPGVVLGQGEGHRDQITLRGQNTTADFYLDGLRDDTQYYRSLYNIERVEVLKGANALLF GRGGGGGVINRVSKTPDLDRTKGEASANVDSFGAFALAADWNQPLAESVGGRLNATYEEFDNHRQDFEGRFIGVNPTLAF EPGEATRVELSYNYDDDRRTTDRGVPSVAATKKPLTGHDDTFFGRNDVNIATVKAHIAQARIDHDLADGLSFNVLGQYSH TDKYYGNVFAGSSVNDAGQLTLSGYSSANVRESWVGQTNLVWEGHTGPIGHTVLAGLEISSQDTTSLRSDPDFGTASTTV TLAKRMTIPAVTFKAPSRSSLSRVDTWSAYFQDQVELASFLQVVAGIRFDEFRINSTDRINATSAQRTDRKWSPRFGVVL KPRKEMSFYASFTRSFLPQSGDQFGSLDATQATLAPERFENLEAGVKWDINPGLAFTAAAYRLDRENSRFNNPVTGLPEL SGKTRAKGIELQLAGRVLPDWQVSLGYTLQDGEVRSRTTAALPGTKLAQLPRHQFAAWTRYDVTRQLGLGLGVTHQSKSF ATISNAVTLPAFTRVDAAVFYDLSERFSIQLNVENLTDTDYFPSAHTDNNISTGEPINARLSVRVKF >Mature_707_residues MIIVNKGTTVNRIACLLLAGTTLAPASAFAVEAVPADAAFDAETAGTVIVVTGSADGYRPVDANAVKTPTPLVDVPQTIT VLTREQLDDQAVTQLGDALRYVPGVVLGQGEGHRDQITLRGQNTTADFYLDGLRDDTQYYRSLYNIERVEVLKGANALLF GRGGGGGVINRVSKTPDLDRTKGEASANVDSFGAFALAADWNQPLAESVGGRLNATYEEFDNHRQDFEGRFIGVNPTLAF EPGEATRVELSYNYDDDRRTTDRGVPSVAATKKPLTGHDDTFFGRNDVNIATVKAHIAQARIDHDLADGLSFNVLGQYSH TDKYYGNVFAGSSVNDAGQLTLSGYSSANVRESWVGQTNLVWEGHTGPIGHTVLAGLEISSQDTTSLRSDPDFGTASTTV TLAKRMTIPAVTFKAPSRSSLSRVDTWSAYFQDQVELASFLQVVAGIRFDEFRINSTDRINATSAQRTDRKWSPRFGVVL KPRKEMSFYASFTRSFLPQSGDQFGSLDATQATLAPERFENLEAGVKWDINPGLAFTAAAYRLDRENSRFNNPVTGLPEL SGKTRAKGIELQLAGRVLPDWQVSLGYTLQDGEVRSRTTAALPGTKLAQLPRHQFAAWTRYDVTRQLGLGLGVTHQSKSF ATISNAVTLPAFTRVDAAVFYDLSERFSIQLNVENLTDTDYFPSAHTDNNISTGEPINARLSVRVKF
Specific function: Probably involved in iron transport [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787024, Length=755, Percent_Identity=28.0794701986755, Blast_Score=211, Evalue=1e-55, Organism=Escherichia coli, GI1786344, Length=678, Percent_Identity=25.0737463126844, Blast_Score=137, Evalue=2e-33, Organism=Escherichia coli, GI1787344, Length=744, Percent_Identity=24.1935483870968, Blast_Score=125, Evalue=8e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 76943; Mature: 76943
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIVNKGTTVNRIACLLLAGTTLAPASAFAVEAVPADAAFDAETAGTVIVVTGSADGYRP CEEECCCCCHHHHEEEHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC VDANAVKTPTPLVDVPQTITVLTREQLDDQAVTQLGDALRYVPGVVLGQGEGHRDQITLR CCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEE GQNTTADFYLDGLRDDTQYYRSLYNIERVEVLKGANALLFGRGGGGGVINRVSKTPDLDR CCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHCCCCEEEEECCCCCHHHHHCCCCCCCCC TKGEASANVDSFGAFALAADWNQPLAESVGGRLNATYEEFDNHRQDFEGRFIGVNPTLAF CCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCHHHHHCHHHCCCCEEEECCCEEEE EPGEATRVELSYNYDDDRRTTDRGVPSVAATKKPLTGHDDTFFGRNDVNIATVKAHIAQA CCCCCEEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHH RIDHDLADGLSFNVLGQYSHTDKYYGNVFAGSSVNDAGQLTLSGYSSANVRESWVGQTNL HHHHHHHCCCEEEEEECCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCHHHHCCCCEE VWEGHTGPIGHTVLAGLEISSQDTTSLRSDPDFGTASTTVTLAKRMTIPAVTFKAPSRSS EEECCCCCCCHHEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHCCCCEEEECCCCCCC LSRVDTWSAYFQDQVELASFLQVVAGIRFDEFRINSTDRINATSAQRTDRKWSPRFGVVL HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCEEE KPRKEMSFYASFTRSFLPQSGDQFGSLDATQATLAPERFENLEAGVKWDINPGLAFTAAA CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHHHHHCCCCEEEECCCCCEEEHHH YRLDRENSRFNNPVTGLPELSGKTRAKGIELQLAGRVLPDWQVSLGYTLQDGEVRSRTTA HEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEEECCCCCCCEEE ALPGTKLAQLPRHQFAAWTRYDVTRQLGLGLGVTHQSKSFATISNAVTLPAFTRVDAAVF CCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEECCCHHHHCEEEE YDLSERFSIQLNVENLTDTDYFPSAHTDNNISTGEPINARLSVRVKF EECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC >Mature Secondary Structure MIIVNKGTTVNRIACLLLAGTTLAPASAFAVEAVPADAAFDAETAGTVIVVTGSADGYRP CEEECCCCCHHHHEEEHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC VDANAVKTPTPLVDVPQTITVLTREQLDDQAVTQLGDALRYVPGVVLGQGEGHRDQITLR CCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEE GQNTTADFYLDGLRDDTQYYRSLYNIERVEVLKGANALLFGRGGGGGVINRVSKTPDLDR CCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHCCCCEEEEECCCCCHHHHHCCCCCCCCC TKGEASANVDSFGAFALAADWNQPLAESVGGRLNATYEEFDNHRQDFEGRFIGVNPTLAF CCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCHHHHHCHHHCCCCEEEECCCEEEE EPGEATRVELSYNYDDDRRTTDRGVPSVAATKKPLTGHDDTFFGRNDVNIATVKAHIAQA CCCCCEEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHH RIDHDLADGLSFNVLGQYSHTDKYYGNVFAGSSVNDAGQLTLSGYSSANVRESWVGQTNL HHHHHHHCCCEEEEEECCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCHHHHCCCCEE VWEGHTGPIGHTVLAGLEISSQDTTSLRSDPDFGTASTTVTLAKRMTIPAVTFKAPSRSS EEECCCCCCCHHEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHCCCCEEEECCCCCCC LSRVDTWSAYFQDQVELASFLQVVAGIRFDEFRINSTDRINATSAQRTDRKWSPRFGVVL HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCEEE KPRKEMSFYASFTRSFLPQSGDQFGSLDATQATLAPERFENLEAGVKWDINPGLAFTAAA CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHHHHHCCCCEEEECCCCCEEEHHH YRLDRENSRFNNPVTGLPELSGKTRAKGIELQLAGRVLPDWQVSLGYTLQDGEVRSRTTA HEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEEECCCCCCCEEE ALPGTKLAQLPRHQFAAWTRYDVTRQLGLGLGVTHQSKSFATISNAVTLPAFTRVDAAVF CCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEECCCHHHHCEEEE YDLSERFSIQLNVENLTDTDYFPSAHTDNNISTGEPINARLSVRVKF EECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12910271; 10079522 [H]