| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87201290
Identifier: 87201290
GI number: 87201290
Start: 3497425
End: 3498555
Strand: Direct
Name: 87201290
Synonym: Saro_3278
Alternate gene names: NA
Gene position: 3497425-3498555 (Clockwise)
Preceding gene: 87201289
Following gene: 87201292
Centisome position: 98.2
GC content: 66.4
Gene sequence:
>1131_bases ATGACCGACATCCGCATCAACGCCGCATTCGATTCCGGCAACATCGAAGTCCTTGCCACCCGGGGCGCGACGGCCCGACT GGCGATCCGCAAGGACCGGGAATCCGACTTCTTCCAGTGGTTCCATTTCCGCGTCGACGGCGCGGATGACCGCGAGCTCG AGCTGAAGATCACCGGGCTCGAGGCTTCCGCCTATCCCGGCGGATGGCCTGGCTATCGCGCGGCGGTCTCGCAGGATCGG GAGATATGGAGCCGCGCCGAATCGCACTACGATCCGCGCGAGGACGGGGGCACACTGACGATCCGGCACAGGCCCGAGGC GGGACCCTGCTGGTTCGCATACTTCGCGCCCTATTCGATGGAGCGGCACCACGATCTCGTCGCCGCCACGGCAGGCTGCG ACGGCGTCGAATACCGGTGCCTGGGAACGAGCGTCGAGGGCCAGCCAGTCGACTGCCTGGTCATTGGCGAGGGGCCGAAG CAGGTCTGGCTCTACGCGCGGCAGCATCCCGGCGAATCGATGGCCGAATGGTGGATGGAAGGCGCGCTCGACATGCTGAC CGACCCGGCCGATCCGCATGCGCGGCGGCTGCGCCAACTCTGCCGGTTCCACATCGTACCCAATGCCAATCCCGACGGTT CGTGCCGGGGCCATTTGCGGACCAATGCAGTAGGCGTGAACCTCAACCGCGAATGGCACGAGCCGAGCGCCGCCAGATCG CCCGAGGTTCTGGCGATCCGCAACGCGATGGACGAGAGCGGCGTGGACTTCGCCATGGACGTCCACGGCGACGAGGCGAT CCCGCACGTGTTCCTCGCGGGGTTCGAGGGCATCCCTTCCTGGACCGACGAGCTGGGCGAAGGATACGCGCGCTATCGCC GCATCCTCGAACGACGCACGCCGGACTTCCAGACGAAGCGCGGTTATCCGGTTGCCGCACCTGGGCGGGCAAACCTGTCG ATGTCGACCAACCAGGTGGCGGAACGCTTCGGCTGCGTGGCGATGACGCTGGAAATGCCGTTCAAGGACAACGACGACCT GCCCTGCAAGGCCCAGGGATGGAGCCCGGACCGCAGCAAGCTGCTGGCGCGCGAATGCCTGGCAGCGCTGCTCGAATGGT TACAGGACTGA
Upstream 100 bases:
>100_bases CAAAGGCGAAGGAGGCAGCCGCCGCAATTGCCGCGCCGCGCATGGCACACGCGCTGTTCGCGGGCTTCCCCGGCACGTCG GGCGATACTATCACGGTCAG
Downstream 100 bases:
>100_bases CGGCTTTTACGAGGCGTTAAGGGTTGCGGGCGCATGCCGGGGACATGGCCCGTGCCCTCGCCCTGATCCCGACCGCTCTT CCGCCCGTGTCGCTTGCCGA
Product: peptidase M14, carboxypeptidase A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 376; Mature: 375
Protein sequence:
>376_residues MTDIRINAAFDSGNIEVLATRGATARLAIRKDRESDFFQWFHFRVDGADDRELELKITGLEASAYPGGWPGYRAAVSQDR EIWSRAESHYDPREDGGTLTIRHRPEAGPCWFAYFAPYSMERHHDLVAATAGCDGVEYRCLGTSVEGQPVDCLVIGEGPK QVWLYARQHPGESMAEWWMEGALDMLTDPADPHARRLRQLCRFHIVPNANPDGSCRGHLRTNAVGVNLNREWHEPSAARS PEVLAIRNAMDESGVDFAMDVHGDEAIPHVFLAGFEGIPSWTDELGEGYARYRRILERRTPDFQTKRGYPVAAPGRANLS MSTNQVAERFGCVAMTLEMPFKDNDDLPCKAQGWSPDRSKLLARECLAALLEWLQD
Sequences:
>Translated_376_residues MTDIRINAAFDSGNIEVLATRGATARLAIRKDRESDFFQWFHFRVDGADDRELELKITGLEASAYPGGWPGYRAAVSQDR EIWSRAESHYDPREDGGTLTIRHRPEAGPCWFAYFAPYSMERHHDLVAATAGCDGVEYRCLGTSVEGQPVDCLVIGEGPK QVWLYARQHPGESMAEWWMEGALDMLTDPADPHARRLRQLCRFHIVPNANPDGSCRGHLRTNAVGVNLNREWHEPSAARS PEVLAIRNAMDESGVDFAMDVHGDEAIPHVFLAGFEGIPSWTDELGEGYARYRRILERRTPDFQTKRGYPVAAPGRANLS MSTNQVAERFGCVAMTLEMPFKDNDDLPCKAQGWSPDRSKLLARECLAALLEWLQD >Mature_375_residues TDIRINAAFDSGNIEVLATRGATARLAIRKDRESDFFQWFHFRVDGADDRELELKITGLEASAYPGGWPGYRAAVSQDRE IWSRAESHYDPREDGGTLTIRHRPEAGPCWFAYFAPYSMERHHDLVAATAGCDGVEYRCLGTSVEGQPVDCLVIGEGPKQ VWLYARQHPGESMAEWWMEGALDMLTDPADPHARRLRQLCRFHIVPNANPDGSCRGHLRTNAVGVNLNREWHEPSAARSP EVLAIRNAMDESGVDFAMDVHGDEAIPHVFLAGFEGIPSWTDELGEGYARYRRILERRTPDFQTKRGYPVAAPGRANLSM STNQVAERFGCVAMTLEMPFKDNDDLPCKAQGWSPDRSKLLARECLAALLEWLQD
Specific function: Unknown
COG id: COG2866
COG function: function code E; Predicted carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI120444924, Length=379, Percent_Identity=26.1213720316623, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI31657119, Length=307, Percent_Identity=28.6644951140065, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI170763513, Length=321, Percent_Identity=25.8566978193146, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI78482633, Length=260, Percent_Identity=26.1538461538462, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI118421091, Length=260, Percent_Identity=26.1538461538462, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI190194403, Length=298, Percent_Identity=26.510067114094, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193202888, Length=371, Percent_Identity=24.2587601078167, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI115533904, Length=301, Percent_Identity=25.5813953488372, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI28571179, Length=207, Percent_Identity=26.5700483091787, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24641847, Length=207, Percent_Identity=26.5700483091787, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI161077807, Length=207, Percent_Identity=26.5700483091787, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24641845, Length=121, Percent_Identity=33.0578512396694, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000834 [H]
Pfam domain/function: PF00246 Peptidase_M14 [H]
EC number: NA
Molecular weight: Translated: 42220; Mature: 42088
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDIRINAAFDSGNIEVLATRGATARLAIRKDRESDFFQWFHFRVDGADDRELELKITGL CCEEEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEEEEEE EASAYPGGWPGYRAAVSQDREIWSRAESHYDPREDGGTLTIRHRPEAGPCWFAYFAPYSM ECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEECCCCC ERHHDLVAATAGCDGVEYRCLGTSVEGQPVDCLVIGEGPKQVWLYARQHPGESMAEWWME CCCCCEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHH GALDMLTDPADPHARRLRQLCRFHIVPNANPDGSCRGHLRTNAVGVNLNREWHEPSAARS HHHHHHCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCEEEECEEEEECCCCCCCCCCCCC PEVLAIRNAMDESGVDFAMDVHGDEAIPHVFLAGFEGIPSWTDELGEGYARYRRILERRT CCEEEEEHHCCCCCCEEEEECCCCCCCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHHCC PDFQTKRGYPVAAPGRANLSMSTNQVAERFGCVAMTLEMPFKDNDDLPCKAQGWSPDRSK CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCCHHHH LLARECLAALLEWLQD HHHHHHHHHHHHHHCC >Mature Secondary Structure TDIRINAAFDSGNIEVLATRGATARLAIRKDRESDFFQWFHFRVDGADDRELELKITGL CEEEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEEEEEE EASAYPGGWPGYRAAVSQDREIWSRAESHYDPREDGGTLTIRHRPEAGPCWFAYFAPYSM ECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEECCCCC ERHHDLVAATAGCDGVEYRCLGTSVEGQPVDCLVIGEGPKQVWLYARQHPGESMAEWWME CCCCCEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHH GALDMLTDPADPHARRLRQLCRFHIVPNANPDGSCRGHLRTNAVGVNLNREWHEPSAARS HHHHHHCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCEEEECEEEEECCCCCCCCCCCCC PEVLAIRNAMDESGVDFAMDVHGDEAIPHVFLAGFEGIPSWTDELGEGYARYRRILERRT CCEEEEEHHCCCCCCEEEEECCCCCCCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHHCC PDFQTKRGYPVAAPGRANLSMSTNQVAERFGCVAMTLEMPFKDNDDLPCKAQGWSPDRSK CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCCHHHH LLARECLAALLEWLQD HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8320209 [H]