Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

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The map label for this gene is 87201290

Identifier: 87201290

GI number: 87201290

Start: 3497425

End: 3498555

Strand: Direct

Name: 87201290

Synonym: Saro_3278

Alternate gene names: NA

Gene position: 3497425-3498555 (Clockwise)

Preceding gene: 87201289

Following gene: 87201292

Centisome position: 98.2

GC content: 66.4

Gene sequence:

>1131_bases
ATGACCGACATCCGCATCAACGCCGCATTCGATTCCGGCAACATCGAAGTCCTTGCCACCCGGGGCGCGACGGCCCGACT
GGCGATCCGCAAGGACCGGGAATCCGACTTCTTCCAGTGGTTCCATTTCCGCGTCGACGGCGCGGATGACCGCGAGCTCG
AGCTGAAGATCACCGGGCTCGAGGCTTCCGCCTATCCCGGCGGATGGCCTGGCTATCGCGCGGCGGTCTCGCAGGATCGG
GAGATATGGAGCCGCGCCGAATCGCACTACGATCCGCGCGAGGACGGGGGCACACTGACGATCCGGCACAGGCCCGAGGC
GGGACCCTGCTGGTTCGCATACTTCGCGCCCTATTCGATGGAGCGGCACCACGATCTCGTCGCCGCCACGGCAGGCTGCG
ACGGCGTCGAATACCGGTGCCTGGGAACGAGCGTCGAGGGCCAGCCAGTCGACTGCCTGGTCATTGGCGAGGGGCCGAAG
CAGGTCTGGCTCTACGCGCGGCAGCATCCCGGCGAATCGATGGCCGAATGGTGGATGGAAGGCGCGCTCGACATGCTGAC
CGACCCGGCCGATCCGCATGCGCGGCGGCTGCGCCAACTCTGCCGGTTCCACATCGTACCCAATGCCAATCCCGACGGTT
CGTGCCGGGGCCATTTGCGGACCAATGCAGTAGGCGTGAACCTCAACCGCGAATGGCACGAGCCGAGCGCCGCCAGATCG
CCCGAGGTTCTGGCGATCCGCAACGCGATGGACGAGAGCGGCGTGGACTTCGCCATGGACGTCCACGGCGACGAGGCGAT
CCCGCACGTGTTCCTCGCGGGGTTCGAGGGCATCCCTTCCTGGACCGACGAGCTGGGCGAAGGATACGCGCGCTATCGCC
GCATCCTCGAACGACGCACGCCGGACTTCCAGACGAAGCGCGGTTATCCGGTTGCCGCACCTGGGCGGGCAAACCTGTCG
ATGTCGACCAACCAGGTGGCGGAACGCTTCGGCTGCGTGGCGATGACGCTGGAAATGCCGTTCAAGGACAACGACGACCT
GCCCTGCAAGGCCCAGGGATGGAGCCCGGACCGCAGCAAGCTGCTGGCGCGCGAATGCCTGGCAGCGCTGCTCGAATGGT
TACAGGACTGA

Upstream 100 bases:

>100_bases
CAAAGGCGAAGGAGGCAGCCGCCGCAATTGCCGCGCCGCGCATGGCACACGCGCTGTTCGCGGGCTTCCCCGGCACGTCG
GGCGATACTATCACGGTCAG

Downstream 100 bases:

>100_bases
CGGCTTTTACGAGGCGTTAAGGGTTGCGGGCGCATGCCGGGGACATGGCCCGTGCCCTCGCCCTGATCCCGACCGCTCTT
CCGCCCGTGTCGCTTGCCGA

Product: peptidase M14, carboxypeptidase A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MTDIRINAAFDSGNIEVLATRGATARLAIRKDRESDFFQWFHFRVDGADDRELELKITGLEASAYPGGWPGYRAAVSQDR
EIWSRAESHYDPREDGGTLTIRHRPEAGPCWFAYFAPYSMERHHDLVAATAGCDGVEYRCLGTSVEGQPVDCLVIGEGPK
QVWLYARQHPGESMAEWWMEGALDMLTDPADPHARRLRQLCRFHIVPNANPDGSCRGHLRTNAVGVNLNREWHEPSAARS
PEVLAIRNAMDESGVDFAMDVHGDEAIPHVFLAGFEGIPSWTDELGEGYARYRRILERRTPDFQTKRGYPVAAPGRANLS
MSTNQVAERFGCVAMTLEMPFKDNDDLPCKAQGWSPDRSKLLARECLAALLEWLQD

Sequences:

>Translated_376_residues
MTDIRINAAFDSGNIEVLATRGATARLAIRKDRESDFFQWFHFRVDGADDRELELKITGLEASAYPGGWPGYRAAVSQDR
EIWSRAESHYDPREDGGTLTIRHRPEAGPCWFAYFAPYSMERHHDLVAATAGCDGVEYRCLGTSVEGQPVDCLVIGEGPK
QVWLYARQHPGESMAEWWMEGALDMLTDPADPHARRLRQLCRFHIVPNANPDGSCRGHLRTNAVGVNLNREWHEPSAARS
PEVLAIRNAMDESGVDFAMDVHGDEAIPHVFLAGFEGIPSWTDELGEGYARYRRILERRTPDFQTKRGYPVAAPGRANLS
MSTNQVAERFGCVAMTLEMPFKDNDDLPCKAQGWSPDRSKLLARECLAALLEWLQD
>Mature_375_residues
TDIRINAAFDSGNIEVLATRGATARLAIRKDRESDFFQWFHFRVDGADDRELELKITGLEASAYPGGWPGYRAAVSQDRE
IWSRAESHYDPREDGGTLTIRHRPEAGPCWFAYFAPYSMERHHDLVAATAGCDGVEYRCLGTSVEGQPVDCLVIGEGPKQ
VWLYARQHPGESMAEWWMEGALDMLTDPADPHARRLRQLCRFHIVPNANPDGSCRGHLRTNAVGVNLNREWHEPSAARSP
EVLAIRNAMDESGVDFAMDVHGDEAIPHVFLAGFEGIPSWTDELGEGYARYRRILERRTPDFQTKRGYPVAAPGRANLSM
STNQVAERFGCVAMTLEMPFKDNDDLPCKAQGWSPDRSKLLARECLAALLEWLQD

Specific function: Unknown

COG id: COG2866

COG function: function code E; Predicted carboxypeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI120444924, Length=379, Percent_Identity=26.1213720316623, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI31657119, Length=307, Percent_Identity=28.6644951140065, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI170763513, Length=321, Percent_Identity=25.8566978193146, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI78482633, Length=260, Percent_Identity=26.1538461538462, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI118421091, Length=260, Percent_Identity=26.1538461538462, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI190194403, Length=298, Percent_Identity=26.510067114094, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193202888, Length=371, Percent_Identity=24.2587601078167, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI115533904, Length=301, Percent_Identity=25.5813953488372, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI28571179, Length=207, Percent_Identity=26.5700483091787, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24641847, Length=207, Percent_Identity=26.5700483091787, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI161077807, Length=207, Percent_Identity=26.5700483091787, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24641845, Length=121, Percent_Identity=33.0578512396694, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000834 [H]

Pfam domain/function: PF00246 Peptidase_M14 [H]

EC number: NA

Molecular weight: Translated: 42220; Mature: 42088

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDIRINAAFDSGNIEVLATRGATARLAIRKDRESDFFQWFHFRVDGADDRELELKITGL
CCEEEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEEEEEE
EASAYPGGWPGYRAAVSQDREIWSRAESHYDPREDGGTLTIRHRPEAGPCWFAYFAPYSM
ECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEECCCCC
ERHHDLVAATAGCDGVEYRCLGTSVEGQPVDCLVIGEGPKQVWLYARQHPGESMAEWWME
CCCCCEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHH
GALDMLTDPADPHARRLRQLCRFHIVPNANPDGSCRGHLRTNAVGVNLNREWHEPSAARS
HHHHHHCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCEEEECEEEEECCCCCCCCCCCCC
PEVLAIRNAMDESGVDFAMDVHGDEAIPHVFLAGFEGIPSWTDELGEGYARYRRILERRT
CCEEEEEHHCCCCCCEEEEECCCCCCCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
PDFQTKRGYPVAAPGRANLSMSTNQVAERFGCVAMTLEMPFKDNDDLPCKAQGWSPDRSK
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCCHHHH
LLARECLAALLEWLQD
HHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TDIRINAAFDSGNIEVLATRGATARLAIRKDRESDFFQWFHFRVDGADDRELELKITGL
CEEEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEEEEEE
EASAYPGGWPGYRAAVSQDREIWSRAESHYDPREDGGTLTIRHRPEAGPCWFAYFAPYSM
ECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEECCCCC
ERHHDLVAATAGCDGVEYRCLGTSVEGQPVDCLVIGEGPKQVWLYARQHPGESMAEWWME
CCCCCEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHH
GALDMLTDPADPHARRLRQLCRFHIVPNANPDGSCRGHLRTNAVGVNLNREWHEPSAARS
HHHHHHCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCEEEECEEEEECCCCCCCCCCCCC
PEVLAIRNAMDESGVDFAMDVHGDEAIPHVFLAGFEGIPSWTDELGEGYARYRRILERRT
CCEEEEEHHCCCCCCEEEEECCCCCCCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
PDFQTKRGYPVAAPGRANLSMSTNQVAERFGCVAMTLEMPFKDNDDLPCKAQGWSPDRSK
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCCHHHH
LLARECLAALLEWLQD
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8320209 [H]