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The map label for this gene is sodC2 [H]

Identifier: 87201147

GI number: 87201147

Start: 3346022

End: 3346597

Strand: Direct

Name: sodC2 [H]

Synonym: Saro_3135

Alternate gene names: 87201147

Gene position: 3346022-3346597 (Clockwise)

Preceding gene: 87201146

Following gene: 87201155

Centisome position: 93.95

GC content: 66.32

Gene sequence:

>576_bases
ATGGTTCCGGATCGACACGGCTCCGGAGACCAAAGCATGACAATCAAGCTTCCCCTTTCGCTGACGGTTTGCGCATTGAC
GCTTGGCGCCTGCACGACCATCGATCGCGACGAGGCTCCCCGCGTCCTCGCCCGCGCCGCGCTGGCGGATGCGAACGGCC
GGAGCGTCGGCTCGGCAAAGATCGAGCAGACCGGACTGATCGTTCACCTTAAGGCTACCGTCGAAGGCCTCTCGCCGGGG
GAACATGGCATCCATCTGCACACCGCCGGGAAGTGCGAGGCGCCGTCGTTCGCAACGGCCGGCGGGCACCTCAACCCGTC
AGCGCACCAGCACGGCACGCTTAATGCCGCAGGCCCTCATCTGGGCGACTTGCCCAACATCGCGGTTTCCGCAAGCGGGA
CCGGCTCGCTCGACGTGCCCCTGAAGGGTTCGTCTGCCGAAGTTCTGGCCCAAGTCCTGGACGCGGACGGCACGGCCGTT
GTCGTCCATGCCGGCCCCGACGATTACAAGACAGATCCGGCGGGCAACAGCGGCGGACGCATTGCTTGCGGCGTTCTCGT
CAGCGAGGCGCGCTGA

Upstream 100 bases:

>100_bases
CCGTCGCGTGGAAATCACGTACGGTCCGGGTTCGGGCATGTAATCTCGATTACTGCCGAAAACGATCGAGGGGCTGGAGC
AATCCAGCCCCTTTTTCGTT

Downstream 100 bases:

>100_bases
GGCTCCGACAGTAGACCTAGAGCGGCTCTCCGGCGGCGCGGGCGCGGGCGATCAGGCCCGCTTGCGCAGCCGGGACGCTG
CGGATCGCCACGAGCAACAG

Product: superoxide dismutase, copper/zinc binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MVPDRHGSGDQSMTIKLPLSLTVCALTLGACTTIDRDEAPRVLARAALADANGRSVGSAKIEQTGLIVHLKATVEGLSPG
EHGIHLHTAGKCEAPSFATAGGHLNPSAHQHGTLNAAGPHLGDLPNIAVSASGTGSLDVPLKGSSAEVLAQVLDADGTAV
VVHAGPDDYKTDPAGNSGGRIACGVLVSEAR

Sequences:

>Translated_191_residues
MVPDRHGSGDQSMTIKLPLSLTVCALTLGACTTIDRDEAPRVLARAALADANGRSVGSAKIEQTGLIVHLKATVEGLSPG
EHGIHLHTAGKCEAPSFATAGGHLNPSAHQHGTLNAAGPHLGDLPNIAVSASGTGSLDVPLKGSSAEVLAQVLDADGTAV
VVHAGPDDYKTDPAGNSGGRIACGVLVSEAR
>Mature_191_residues
MVPDRHGSGDQSMTIKLPLSLTVCALTLGACTTIDRDEAPRVLARAALADANGRSVGSAKIEQTGLIVHLKATVEGLSPG
EHGIHLHTAGKCEAPSFATAGGHLNPSAHQHGTLNAAGPHLGDLPNIAVSASGTGSLDVPLKGSSAEVLAQVLDADGTAV
VVHAGPDDYKTDPAGNSGGRIACGVLVSEAR

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=180, Percent_Identity=32.2222222222222, Blast_Score=68, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17554806, Length=178, Percent_Identity=30.8988764044944, Blast_Score=73, Evalue=8e-14,
Organism=Drosophila melanogaster, GI85725006, Length=185, Percent_Identity=32.4324324324324, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45551081, Length=182, Percent_Identity=31.8681318681319, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24652737, Length=182, Percent_Identity=31.8681318681319, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007680, Length=184, Percent_Identity=32.6086956521739, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 19125; Mature: 19125

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPDRHGSGDQSMTIKLPLSLTVCALTLGACTTIDRDEAPRVLARAALADANGRSVGSAK
CCCCCCCCCCCEEEEEECCHHEEEHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCE
IEQTGLIVHLKATVEGLSPGEHGIHLHTAGKCEAPSFATAGGHLNPSAHQHGTLNAAGPH
EECCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
LGDLPNIAVSASGTGSLDVPLKGSSAEVLAQVLDADGTAVVVHAGPDDYKTDPAGNSGGR
CCCCCCEEEECCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCE
IACGVLVSEAR
EEEEEEEECCC
>Mature Secondary Structure
MVPDRHGSGDQSMTIKLPLSLTVCALTLGACTTIDRDEAPRVLARAALADANGRSVGSAK
CCCCCCCCCCCEEEEEECCHHEEEHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCE
IEQTGLIVHLKATVEGLSPGEHGIHLHTAGKCEAPSFATAGGHLNPSAHQHGTLNAAGPH
EECCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
LGDLPNIAVSASGTGSLDVPLKGSSAEVLAQVLDADGTAVVVHAGPDDYKTDPAGNSGGR
CCCCCCEEEECCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCE
IACGVLVSEAR
EEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]