| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201133
Identifier: 87201133
GI number: 87201133
Start: 3334031
End: 3334483
Strand: Direct
Name: 87201133
Synonym: Saro_3121
Alternate gene names: NA
Gene position: 3334031-3334483 (Clockwise)
Preceding gene: 87201132
Following gene: 87201134
Centisome position: 93.61
GC content: 69.54
Gene sequence:
>453_bases ATGACCGCCGCCTTCCCTCGGACGGGAGCACCGCTTCGGTTTGCCGGATATGCGGCGATCTTCAGCAAGCGGGACAGCGG TGGCGACACAATCCTGCCGGGCGCGTTCAAGGACAGCCTGGAGCGCCGCCTTTCCGAGGGTCTGCGCCTGCCGCTGCTGT GGCAACACCGGCCCGACCAGCGCATCGGCTGGATCGAGAGCGCAGGCGAGGATGAACGCGGGCTCCGCGTGATCGCGCGG ATCGACGATGCCGAAAGCGCAGCGGCACGCGCGCTGTCGGCCGGCAAGATCGACGGCCTGTCGTTCGGATACAGGGTGCG GCAGGGCCGCGCGCTGCCGGGCGGGCGCGAGTTGCACGATCTCGACATACTCGAAGTGAGCCTGGTCACCCGGCCGATGC AGCCGCTGGCGCGGGTGCACAGCCTTGAAAGCGGCACGGCGCCACAGGCGTGA
Upstream 100 bases:
>100_bases CGAGCGCGTGGAAGGCAGCCGTGAACTGGGCCGTGCGCGCTGTTCTGGCGCTGCTGCTTTTCGCGATCGCGGTGCGCTTC GGGTCGGCGGAGCTGGTGCG
Downstream 100 bases:
>100_bases CCCCGCAACCCTGACGAAGTTACCACCGGGCCGCCTCATGGGGCGGCCTTTTTCATGCAGAAAGGACGTTTGGCCCCATG ACTACCGAAATCGAAACCAA
Product: prohead peptidase
Products: NA
Alternate protein names: Peptidase; Prohead Peptidase; Caudovirus Prohead Protease; HK97 Family Phage Prohead Protease; Phage Protease
Number of amino acids: Translated: 150; Mature: 149
Protein sequence:
>150_residues MTAAFPRTGAPLRFAGYAAIFSKRDSGGDTILPGAFKDSLERRLSEGLRLPLLWQHRPDQRIGWIESAGEDERGLRVIAR IDDAESAAARALSAGKIDGLSFGYRVRQGRALPGGRELHDLDILEVSLVTRPMQPLARVHSLESGTAPQA
Sequences:
>Translated_150_residues MTAAFPRTGAPLRFAGYAAIFSKRDSGGDTILPGAFKDSLERRLSEGLRLPLLWQHRPDQRIGWIESAGEDERGLRVIAR IDDAESAAARALSAGKIDGLSFGYRVRQGRALPGGRELHDLDILEVSLVTRPMQPLARVHSLESGTAPQA >Mature_149_residues TAAFPRTGAPLRFAGYAAIFSKRDSGGDTILPGAFKDSLERRLSEGLRLPLLWQHRPDQRIGWIESAGEDERGLRVIARI DDAESAAARALSAGKIDGLSFGYRVRQGRALPGGRELHDLDILEVSLVTRPMQPLARVHSLESGTAPQA
Specific function: Unknown
COG id: COG3740
COG function: function code R; Phage head maturation protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16315; Mature: 16184
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAAFPRTGAPLRFAGYAAIFSKRDSGGDTILPGAFKDSLERRLSEGLRLPLLWQHRPDQ CCCCCCCCCCCEEHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHCCCCCCEEECCCCCC RIGWIESAGEDERGLRVIARIDDAESAAARALSAGKIDGLSFGYRVRQGRALPGGRELHD CCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCC LDILEVSLVTRPMQPLARVHSLESGTAPQA CHHHHHHHHHCCHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TAAFPRTGAPLRFAGYAAIFSKRDSGGDTILPGAFKDSLERRLSEGLRLPLLWQHRPDQ CCCCCCCCCCEEHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHCCCCCCEEECCCCCC RIGWIESAGEDERGLRVIARIDDAESAAARALSAGKIDGLSFGYRVRQGRALPGGRELHD CCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCC LDILEVSLVTRPMQPLARVHSLESGTAPQA CHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA