| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87200841
Identifier: 87200841
GI number: 87200841
Start: 3056672
End: 3057211
Strand: Reverse
Name: 87200841
Synonym: Saro_2828
Alternate gene names: NA
Gene position: 3057211-3056672 (Counterclockwise)
Preceding gene: 87200842
Following gene: 87200838
Centisome position: 85.84
GC content: 56.3
Gene sequence:
>540_bases ATGGACCATTTAATCCCCCCGCGATTTCTCATCCTGTTTGGGGCGGTAACTTTGGCCTCATCCGAAGTTCACGCATCACC TGTTCGCTTCGCGGTGGATTTCCCTTTGAGTCAGAGCATCGGTCCGCTCAGAGCGGGACAGTTGTGCATGCCGAGAGGGG CGTTGCGTGGCACCGATCTGGTCCGCGATGATCGAGAGTTCGCGCTTCTTGTCAGGCAGACGTTGGATGACAGGGCTAGT CGCGGTCTCCCGTCGTTAGGTGACGGGGCAGCGCCTTTGATTGAACTTCACCTCCATTCCGCCAACGTAAAGCTTTGCGC AAAGTCGTGGGGAATGTTCGGAATGGGGGACACCAAATCGCTGAGTGGTGACGCCGATTTTACATTTACGTGGAGGCTGG CCAGCGGGGGGCGGTCTCTCAACGTCGAGAAGGTGGAGCTTAGGCCAAAATCGAAAGATCGGGTCACCGGCCCGATGATT TTGCGCTTGGCACTAGAGAACGTTCTGGAACGAGCAGCGAAGTCAGCCTTGGTTCAATAA
Upstream 100 bases:
>100_bases AACTGAAGATCATATTCTGCCAATTTGGTACAAGATACGCTCGACTGCACCAAGTTGTTAAGTTGATTTAGCCCCTTCTT CACCTTGGAAGGAGGGGCTA
Downstream 100 bases:
>100_bases GTCGGGCGGGTGCGGGGCATTTGCCCCGTACCCTGCCTTTCGCTCACCCCCGCGTCCCGTTCATCGGGAAGGTGCCGAAC ATGCCGGCAGTCACTGTGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 179; Mature: 179
Protein sequence:
>179_residues MDHLIPPRFLILFGAVTLASSEVHASPVRFAVDFPLSQSIGPLRAGQLCMPRGALRGTDLVRDDREFALLVRQTLDDRAS RGLPSLGDGAAPLIELHLHSANVKLCAKSWGMFGMGDTKSLSGDADFTFTWRLASGGRSLNVEKVELRPKSKDRVTGPMI LRLALENVLERAAKSALVQ
Sequences:
>Translated_179_residues MDHLIPPRFLILFGAVTLASSEVHASPVRFAVDFPLSQSIGPLRAGQLCMPRGALRGTDLVRDDREFALLVRQTLDDRAS RGLPSLGDGAAPLIELHLHSANVKLCAKSWGMFGMGDTKSLSGDADFTFTWRLASGGRSLNVEKVELRPKSKDRVTGPMI LRLALENVLERAAKSALVQ >Mature_179_residues MDHLIPPRFLILFGAVTLASSEVHASPVRFAVDFPLSQSIGPLRAGQLCMPRGALRGTDLVRDDREFALLVRQTLDDRAS RGLPSLGDGAAPLIELHLHSANVKLCAKSWGMFGMGDTKSLSGDADFTFTWRLASGGRSLNVEKVELRPKSKDRVTGPMI LRLALENVLERAAKSALVQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19446; Mature: 19446
Theoretical pI: Translated: 10.04; Mature: 10.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDHLIPPRFLILFGAVTLASSEVHASPVRFAVDFPLSQSIGPLRAGQLCMPRGALRGTDL CCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCH VRDDREFALLVRQTLDDRASRGLPSLGDGAAPLIELHLHSANVKLCAKSWGMFGMGDTKS HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEEEEHHCCCCCCCCCCC LSGDADFTFTWRLASGGRSLNVEKVELRPKSKDRVTGPMILRLALENVLERAAKSALVQ CCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDHLIPPRFLILFGAVTLASSEVHASPVRFAVDFPLSQSIGPLRAGQLCMPRGALRGTDL CCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCH VRDDREFALLVRQTLDDRASRGLPSLGDGAAPLIELHLHSANVKLCAKSWGMFGMGDTKS HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEEEEHHCCCCCCCCCCC LSGDADFTFTWRLASGGRSLNVEKVELRPKSKDRVTGPMILRLALENVLERAAKSALVQ CCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA