| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87200842
Identifier: 87200842
GI number: 87200842
Start: 3057306
End: 3057845
Strand: Reverse
Name: 87200842
Synonym: Saro_2829
Alternate gene names: NA
Gene position: 3057845-3057306 (Counterclockwise)
Preceding gene: 87200843
Following gene: 87200841
Centisome position: 85.86
GC content: 53.52
Gene sequence:
>540_bases GTGCCTGTGAGGTTTATTCGCGCGGCTGTGTTTGCCGTTTCTCTTTCGTCGCTCGCGGTGGCAGCACCGGCAATCGCAAA GAAAGAGACTCTCTCGGCTCTGCAGGTCCAGGAGATGCAGAGCCATGAAGTCGAAGCAACCAAGGAAATTACGTTTTCCT CGGTAATGTCCGTATTGCAAGATTCAGGATACCGAATCAACTCGGCTGATAAGGACACAGGCCTGATCACAGCGACTGCT TCGACTGCATCGAAGACCACGTGGTTGCCTTTTGTCGGCTTTGGCCGCTCGAAGAAGACGCCTGTCGTATCAGCTTATAT TGAGCAGTACGGTCCGGCCATGACCAAGATTCGTTTGAATTTTGTAATGGTGAAGGCATCTGCGAACACTTACGGTTCCA ATGAGGACGAGGAGCCCATTCTCGATCCGTCGGTCTATCGCGACACCTTTGAAAAGATCGATCAGGCGGTTTTCATCAGA TCGGCTGCGCAAACGCCTGCGCCGGCGTCCGCATCGACCACTGCCACTGCGACGAACTGA
Upstream 100 bases:
>100_bases CGAGCAAACATCACGCTCGATGACCCTGATCATTAAGTTCGACAAGAACAGGGTTGTTTCTGACTTCCGGAGCCGTAGTA GCTCTTTCTAAACTTGGGGG
Downstream 100 bases:
>100_bases AGATCATATTCTGCCAATTTGGTACAAGATACGCTCGACTGCACCAAGTTGTTAAGTTGATTTAGCCCCTTCTTCACCTT GGAAGGAGGGGCTAATGGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MPVRFIRAAVFAVSLSSLAVAAPAIAKKETLSALQVQEMQSHEVEATKEITFSSVMSVLQDSGYRINSADKDTGLITATA STASKTTWLPFVGFGRSKKTPVVSAYIEQYGPAMTKIRLNFVMVKASANTYGSNEDEEPILDPSVYRDTFEKIDQAVFIR SAAQTPAPASASTTATATN
Sequences:
>Translated_179_residues MPVRFIRAAVFAVSLSSLAVAAPAIAKKETLSALQVQEMQSHEVEATKEITFSSVMSVLQDSGYRINSADKDTGLITATA STASKTTWLPFVGFGRSKKTPVVSAYIEQYGPAMTKIRLNFVMVKASANTYGSNEDEEPILDPSVYRDTFEKIDQAVFIR SAAQTPAPASASTTATATN >Mature_178_residues PVRFIRAAVFAVSLSSLAVAAPAIAKKETLSALQVQEMQSHEVEATKEITFSSVMSVLQDSGYRINSADKDTGLITATAS TASKTTWLPFVGFGRSKKTPVVSAYIEQYGPAMTKIRLNFVMVKASANTYGSNEDEEPILDPSVYRDTFEKIDQAVFIRS AAQTPAPASASTTATATN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19193; Mature: 19062
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVRFIRAAVFAVSLSSLAVAAPAIAKKETLSALQVQEMQSHEVEATKEITFSSVMSVLQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH DSGYRINSADKDTGLITATASTASKTTWLPFVGFGRSKKTPVVSAYIEQYGPAMTKIRLN HCCCEECCCCCCCCEEEEECCCCCCCEECEEEECCCCCCCHHHHHHHHHHCCCEEEEEEE FVMVKASANTYGSNEDEEPILDPSVYRDTFEKIDQAVFIRSAAQTPAPASASTTATATN EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure PVRFIRAAVFAVSLSSLAVAAPAIAKKETLSALQVQEMQSHEVEATKEITFSSVMSVLQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH DSGYRINSADKDTGLITATASTASKTTWLPFVGFGRSKKTPVVSAYIEQYGPAMTKIRLN HCCCEECCCCCCCCEEEEECCCCCCCEECEEEECCCCCCCHHHHHHHHHHCCCEEEEEEE FVMVKASANTYGSNEDEEPILDPSVYRDTFEKIDQAVFIRSAAQTPAPASASTTATATN EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA