| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is hisZ [H]
Identifier: 87200694
GI number: 87200694
Start: 2920156
End: 2921307
Strand: Direct
Name: hisZ [H]
Synonym: Saro_2681
Alternate gene names: 87200694
Gene position: 2920156-2921307 (Clockwise)
Preceding gene: 87200693
Following gene: 87200696
Centisome position: 81.99
GC content: 69.62
Gene sequence:
>1152_bases ATGGACACCAGCGACCCCGATCTGCTGCCGGAAGGCCTCGAAGACCGTCTGCCCCGCGATGCGGCCACCGCCACGCGCGT CATGCGCGCGATCCACGGCGTGATGCACGGCCACGGCTACGACCGGGTCATGCCCCCGTCCATCGAGTACGAGCGCAGCT TCGCCGCGCGCATGGCCGGCATCCAGTCGCGCCGCATGTTCCGCTTCGTCGATCCGTCGAGCCTGCGCATGATGGCCCTG CGAAGCGACTTCACCCCGCAGATCGGCCGCCTTGCCGAAACGCGCCTGGCCGAAGCGCCGCGTCCGTTGCGCCTGTGCTA TGCGGGCCAGGTCGTCACGATCAAGGCTGACGGCCTCAACCCCTCGCGCGAAAAGCTCCAGTGCGGCGCCGAACTCGTCG GTGCCGACAATGTCGCCGCCGCCGCCGAAGTCGTCGCCATCGCCATCGAGGCACTTCAGGCCGCGGGCGCCACGGGCGTC AGCGTCGATTTCACGCTGCCCGACCTGGTCGATACGCTGGCCGAAAAGGCCCTCCCCCTGGCCCCCGGCCAGATCGAGGC CGTCCGCCGCGAACTCGACACCAAGGACGCAGGCGGCCTGCGCGATGTCGGCGGCGAAGCCTACGTGCCGTTGCTCTACG CCACCGGCGAATTCGACACGGCGATCGACAAGCTTGCCGCGATCGATGCCGGCGGCGCGCTTGCCAGCCGCATCGACGCG CTCCGGCAGATCGCCGCTCGCCTCGGCGGCGCAGCGCGCCTGACGCTGGACCCGAGCGAGCGCCATGGCTTCGAATACCA GACCTGGTTCGGCTTCACCCTCTATGCCGAAGGGGTGCGCGGCATCGTCGGGCGCGGCGGCACCTATCGCATCGCGGGTT CCGATGCCGATGCACGTCAGGCCAATGCACGACAGCAAGGCGAAGCCGCCACCGGCTTCTCGCTCTATCCCAACGCCCTG ATCGATCTCCTGGCCGCGAACGAGCCCGCCGAAGATACCGTCTTCCTCCCGCTCGGCCATGACCGCGACGAAGCCGCCCG CCTGCGCGCCATCGGCTGGCGAACGGTCGCGGCGCTCAGCGAAGCGGACAGCGCGGACGCTCTCCGCTGCACGCACATGC TCGGCGCGAACGGACCGGAAAAGCTGGCATAA
Upstream 100 bases:
>100_bases GATTTCCCCTGCGGCGGCAAATTGCTTTTTGGGGGTCGCAGTGCTTTTTGCGAAAAACCGGTTCCCACTTTTTCGCGCTA TGCTTTAGGGGCACCGAATC
Downstream 100 bases:
>100_bases GCTCTTCCCAGGGTCGGGCCCGACCGGCGCCTGCCCCTGGTCAGCTTCCGAACGTCGCTTTCAGCCACCGATCCATCACG GGCGTCGCTGCATAGTCGGG
Product: tRNA synthetase, class II (G, H, P and S)
Products: ATP; 5-phospho-alpha-D-ribose 1-diphosphate
Alternate protein names: NA
Number of amino acids: Translated: 383; Mature: 383
Protein sequence:
>383_residues MDTSDPDLLPEGLEDRLPRDAATATRVMRAIHGVMHGHGYDRVMPPSIEYERSFAARMAGIQSRRMFRFVDPSSLRMMAL RSDFTPQIGRLAETRLAEAPRPLRLCYAGQVVTIKADGLNPSREKLQCGAELVGADNVAAAAEVVAIAIEALQAAGATGV SVDFTLPDLVDTLAEKALPLAPGQIEAVRRELDTKDAGGLRDVGGEAYVPLLYATGEFDTAIDKLAAIDAGGALASRIDA LRQIAARLGGAARLTLDPSERHGFEYQTWFGFTLYAEGVRGIVGRGGTYRIAGSDADARQANARQQGEAATGFSLYPNAL IDLLAANEPAEDTVFLPLGHDRDEAARLRAIGWRTVAALSEADSADALRCTHMLGANGPEKLA
Sequences:
>Translated_383_residues MDTSDPDLLPEGLEDRLPRDAATATRVMRAIHGVMHGHGYDRVMPPSIEYERSFAARMAGIQSRRMFRFVDPSSLRMMAL RSDFTPQIGRLAETRLAEAPRPLRLCYAGQVVTIKADGLNPSREKLQCGAELVGADNVAAAAEVVAIAIEALQAAGATGV SVDFTLPDLVDTLAEKALPLAPGQIEAVRRELDTKDAGGLRDVGGEAYVPLLYATGEFDTAIDKLAAIDAGGALASRIDA LRQIAARLGGAARLTLDPSERHGFEYQTWFGFTLYAEGVRGIVGRGGTYRIAGSDADARQANARQQGEAATGFSLYPNAL IDLLAANEPAEDTVFLPLGHDRDEAARLRAIGWRTVAALSEADSADALRCTHMLGANGPEKLA >Mature_383_residues MDTSDPDLLPEGLEDRLPRDAATATRVMRAIHGVMHGHGYDRVMPPSIEYERSFAARMAGIQSRRMFRFVDPSSLRMMAL RSDFTPQIGRLAETRLAEAPRPLRLCYAGQVVTIKADGLNPSREKLQCGAELVGADNVAAAAEVVAIAIEALQAAGATGV SVDFTLPDLVDTLAEKALPLAPGQIEAVRRELDTKDAGGLRDVGGEAYVPLLYATGEFDTAIDKLAAIDAGGALASRIDA LRQIAARLGGAARLTLDPSERHGFEYQTWFGFTLYAEGVRGIVGRGGTYRIAGSDADARQANARQQGEAATGFSLYPNAL IDLLAANEPAEDTVFLPLGHDRDEAARLRAIGWRTVAALSEADSADALRCTHMLGANGPEKLA
Specific function: Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine [H]
COG id: COG3705
COG function: function code E; ATP phosphoribosyltransferase involved in histidine biosynthesis
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family. HisZ subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004516 [H]
Pfam domain/function: PF00587 tRNA-synt_2b [H]
EC number: 2.4.2.17
Molecular weight: Translated: 40838; Mature: 40838
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTSDPDLLPEGLEDRLPRDAATATRVMRAIHGVMHGHGYDRVMPPSIEYERSFAARMAG CCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH IQSRRMFRFVDPSSLRMMALRSDFTPQIGRLAETRLAEAPRPLRLCYAGQVVTIKADGLN HHHCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCC PSREKLQCGAELVGADNVAAAAEVVAIAIEALQAAGATGVSVDFTLPDLVDTLAEKALPL CHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHCCCC APGQIEAVRRELDTKDAGGLRDVGGEAYVPLLYATGEFDTAIDKLAAIDAGGALASRIDA CCCHHHHHHHHHCCCCCCCCHHCCCCEEEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHH LRQIAARLGGAARLTLDPSERHGFEYQTWFGFTLYAEGVRGIVGRGGTYRIAGSDADARQ HHHHHHHCCCCEEEEECCHHHCCCEEEEEECCCEEHHHHHHHHCCCCEEEEECCCCHHHH ANARQQGEAATGFSLYPNALIDLLAANEPAEDTVFLPLGHDRDEAARLRAIGWRTVAALS HHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH EADSADALRCTHMLGANGPEKLA CCCCCHHHHHHHHHCCCCHHCCC >Mature Secondary Structure MDTSDPDLLPEGLEDRLPRDAATATRVMRAIHGVMHGHGYDRVMPPSIEYERSFAARMAG CCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH IQSRRMFRFVDPSSLRMMALRSDFTPQIGRLAETRLAEAPRPLRLCYAGQVVTIKADGLN HHHCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCC PSREKLQCGAELVGADNVAAAAEVVAIAIEALQAAGATGVSVDFTLPDLVDTLAEKALPL CHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHCCCC APGQIEAVRRELDTKDAGGLRDVGGEAYVPLLYATGEFDTAIDKLAAIDAGGALASRIDA CCCHHHHHHHHHCCCCCCCCHHCCCCEEEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHH LRQIAARLGGAARLTLDPSERHGFEYQTWFGFTLYAEGVRGIVGRGGTYRIAGSDADARQ HHHHHHHCCCCEEEEECCHHHCCCEEEEEECCCEEHHHHHHHHCCCCEEEEECCCCHHHH ANARQQGEAATGFSLYPNALIDLLAANEPAEDTVFLPLGHDRDEAARLRAIGWRTVAALS HHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH EADSADALRCTHMLGANGPEKLA CCCCCHHHHHHHHHCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 1-(5-phospho-D-ribosyl)-ATP; diphosphate
Specific reaction: 1-(5-phospho-D-ribosyl)-ATP + diphosphate = ATP + 5-phospho-alpha-D-ribose 1-diphosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA