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The map label for this gene is yciR [C]

Identifier: 87200671

GI number: 87200671

Start: 2895710

End: 2897635

Strand: Reverse

Name: yciR [C]

Synonym: Saro_2658

Alternate gene names: 87200671

Gene position: 2897635-2895710 (Counterclockwise)

Preceding gene: 87200672

Following gene: 87200669

Centisome position: 81.36

GC content: 66.67

Gene sequence:

>1926_bases
TTGGGGCTGCGCTTCTGGTCCGAATGGGAGCAGCGCGAAGGCGACGGTTTCACCAGGGCCTACGGGCACAGTCTCTCGCA
TCGCCTGCCGTTGCTTTACCTGGTGGTCGTGTTCGACGCCTGGCTGATGGCGTTCCGGTTCTGGGCGGTCGCGCCGCATT
GGCTTGCGCTGTTCGGCCCCGTGATCCTGGGCAACTTCGCTTTGTGGCGAGCGTTGTACTGGATGCCGGGAAAGGTGTCG
CGGCGCTCGCTCGGCAGGCTTCGGCGCGATCTGAAGGTCATGAGCTGGGTCGGGGCCGTGTCTGGCTTCATGTTCGCACT
CTGGGTCATGGTGCTGTACCCGCTGGGGGACAGGTCGGCGCAGTCGTTCGTTCATTACATCGTCGCGGTGACCCTGTTCT
CCGGCATCCTCGGGCTGGGCCATTCGCCGATGACCGCGCTGCGCATCGCGATCGCCACGACCATTCCGACCACCGGGCAG
GTACTGTTCAGCGGACACCCTAACGCTGTCCCGGTCGTTCTGGTTCAGATCATCGTCACCTTCATCCTGCTCCTGATAAC
CAACGGGCATCATCGCGATTTCGTGCGTCTCGAGCTTTCCCGACAGCAGCTTGTCCGGCGCGAGCGCGAGGCGGCCCAGA
TGGCGCAGCACAACCTCCTGCAGGCCACGATCGACCCGCTGACCGGCGCGTTGAACCGTCGCGCGGTGCTGGCGCGGCTG
GAGGAGGAACTGACGGCGGGCGGCAGAGGCGCAGAGCCAGCCTGGCTGGCGCTGCTCGACCTCGACGGTTTCAAGCACAT
CAACGACACCTATGGCCATGCGGCCGGAGACGCGGTACTGGCCGCGGTGGCGGCGCGACTCGCCGCGCTCGAACGCGTTC
GCTGTTACGGCCGCCTGGGGGGCGACGAGTTTGCCGCCATCCTCGATCCCGCGTTGAGCGAAGAGGCGGTGCGCTCGCTT
GCCGACGCCTTGTCCGATTCGCTGCGGGCGCCGGTCCTTCACGCGGGTGCCATTCTACGCCTGTCCGGCTCGATCGGCGT
GCATCGCATCGTCGGGCGCAATGCCAGCGACTGCCTCGAGCGGGCGGACGCGGCACTGTACAAGGCCAAGGAGCAGTCCG
ACGGCACCGTCGTGGTATTCAGTCCCGACGATGAAGTGGCGTTGCAGGATCGCGCGGCGATCACGCGCCAGTTCAACGAC
AGCGACCTCGAACAGCGCCTGAAACTTGTTTACCAGCCCATTATCGACGTCGAGAGTGGCCGCACGACCGGTTTCGAGGC
GTTCGTCCGGTGGAGCCCGGACGGTCAGCGCTGGCTTGCGCCCGGGCAATTCATGTCGCTTGCCGAAGCGACCGGGCGGA
CGGGCGAGCTTACCCGCATGGTCATGTCCCGTGCATTGGCGGAATGCCGTGCATGGGAGGATGGCCGCACCCTTTCGATC
AACCTGGCCCCACGCGATGTCATGCGCGCAGGGACGGCCGATGCGCTCGCCCGCATTGCGGAGGACGCCGGCGCGCCGCC
GCATTCGATCATTCTGGAAGTGACCGAACGGGCGCTGCTCGACGATCCGAGGCGCGCCGAGGACCAGCTCCGCGCCTTCC
GGGCCCGTGGCTTCCGCATCGCGCTCGACGATTTCGGCGCCGGCTGGTCCAGCCTCAGTCAGGTCCACCGCCTCCCGCTC
GACATGATCAAGATCGACCAGGAGCTGTCGCGCGCGCTGGTCAGCGATCCCGGTGCGAGGACTCTCGTGAGCACGATCAT
TTCGCTGTCATGGCAGCTCGGTATCGACTGCACGATCGAGGGCGTGGAGGAAGAGGCGCAGGCCGCCACGGCCCGCGCGC
TCGGCATCCGCCTGATGCAGGGCTATTACTTCGGGCGGCCGGACGAGGCCGAGCAGGTACTGTCGAACCTCGCCCGCGTC
GCCTGA

Upstream 100 bases:

>100_bases
CCTTACGCCCTGTTAACCCCGTCGGCGTATGGCTCTGCAAATGGCGACGGGTTCACGATTTTTCTCTACGCTCCAAAGGG
GAAGGGAGCTGATTACGGAC

Downstream 100 bases:

>100_bases
TCAGTGCTCCAGCACGATGGGGCGCGGCGTTCCCGGCGGGTGCAGGCGCCGGAACAGCTTGCCCTTCTCGCTGAACAGCA
CCAGCGCGAGGCTCAGTATC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 641; Mature: 640

Protein sequence:

>641_residues
MGLRFWSEWEQREGDGFTRAYGHSLSHRLPLLYLVVVFDAWLMAFRFWAVAPHWLALFGPVILGNFALWRALYWMPGKVS
RRSLGRLRRDLKVMSWVGAVSGFMFALWVMVLYPLGDRSAQSFVHYIVAVTLFSGILGLGHSPMTALRIAIATTIPTTGQ
VLFSGHPNAVPVVLVQIIVTFILLLITNGHHRDFVRLELSRQQLVRREREAAQMAQHNLLQATIDPLTGALNRRAVLARL
EEELTAGGRGAEPAWLALLDLDGFKHINDTYGHAAGDAVLAAVAARLAALERVRCYGRLGGDEFAAILDPALSEEAVRSL
ADALSDSLRAPVLHAGAILRLSGSIGVHRIVGRNASDCLERADAALYKAKEQSDGTVVVFSPDDEVALQDRAAITRQFND
SDLEQRLKLVYQPIIDVESGRTTGFEAFVRWSPDGQRWLAPGQFMSLAEATGRTGELTRMVMSRALAECRAWEDGRTLSI
NLAPRDVMRAGTADALARIAEDAGAPPHSIILEVTERALLDDPRRAEDQLRAFRARGFRIALDDFGAGWSSLSQVHRLPL
DMIKIDQELSRALVSDPGARTLVSTIISLSWQLGIDCTIEGVEEEAQAATARALGIRLMQGYYFGRPDEAEQVLSNLARV
A

Sequences:

>Translated_641_residues
MGLRFWSEWEQREGDGFTRAYGHSLSHRLPLLYLVVVFDAWLMAFRFWAVAPHWLALFGPVILGNFALWRALYWMPGKVS
RRSLGRLRRDLKVMSWVGAVSGFMFALWVMVLYPLGDRSAQSFVHYIVAVTLFSGILGLGHSPMTALRIAIATTIPTTGQ
VLFSGHPNAVPVVLVQIIVTFILLLITNGHHRDFVRLELSRQQLVRREREAAQMAQHNLLQATIDPLTGALNRRAVLARL
EEELTAGGRGAEPAWLALLDLDGFKHINDTYGHAAGDAVLAAVAARLAALERVRCYGRLGGDEFAAILDPALSEEAVRSL
ADALSDSLRAPVLHAGAILRLSGSIGVHRIVGRNASDCLERADAALYKAKEQSDGTVVVFSPDDEVALQDRAAITRQFND
SDLEQRLKLVYQPIIDVESGRTTGFEAFVRWSPDGQRWLAPGQFMSLAEATGRTGELTRMVMSRALAECRAWEDGRTLSI
NLAPRDVMRAGTADALARIAEDAGAPPHSIILEVTERALLDDPRRAEDQLRAFRARGFRIALDDFGAGWSSLSQVHRLPL
DMIKIDQELSRALVSDPGARTLVSTIISLSWQLGIDCTIEGVEEEAQAATARALGIRLMQGYYFGRPDEAEQVLSNLARV
A
>Mature_640_residues
GLRFWSEWEQREGDGFTRAYGHSLSHRLPLLYLVVVFDAWLMAFRFWAVAPHWLALFGPVILGNFALWRALYWMPGKVSR
RSLGRLRRDLKVMSWVGAVSGFMFALWVMVLYPLGDRSAQSFVHYIVAVTLFSGILGLGHSPMTALRIAIATTIPTTGQV
LFSGHPNAVPVVLVQIIVTFILLLITNGHHRDFVRLELSRQQLVRREREAAQMAQHNLLQATIDPLTGALNRRAVLARLE
EELTAGGRGAEPAWLALLDLDGFKHINDTYGHAAGDAVLAAVAARLAALERVRCYGRLGGDEFAAILDPALSEEAVRSLA
DALSDSLRAPVLHAGAILRLSGSIGVHRIVGRNASDCLERADAALYKAKEQSDGTVVVFSPDDEVALQDRAAITRQFNDS
DLEQRLKLVYQPIIDVESGRTTGFEAFVRWSPDGQRWLAPGQFMSLAEATGRTGELTRMVMSRALAECRAWEDGRTLSIN
LAPRDVMRAGTADALARIAEDAGAPPHSIILEVTERALLDDPRRAEDQLRAFRARGFRIALDDFGAGWSSLSQVHRLPLD
MIKIDQELSRALVSDPGARTLVSTIISLSWQLGIDCTIEGVEEEAQAATARALGIRLMQGYYFGRPDEAEQVLSNLARVA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=415, Percent_Identity=29.8795180722892, Blast_Score=172, Evalue=5e-44,
Organism=Escherichia coli, GI87081921, Length=432, Percent_Identity=26.1574074074074, Blast_Score=152, Evalue=6e-38,
Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=32.3651452282158, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI226510982, Length=297, Percent_Identity=29.96632996633, Blast_Score=119, Evalue=7e-28,
Organism=Escherichia coli, GI87081980, Length=240, Percent_Identity=32.0833333333333, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87081845, Length=221, Percent_Identity=30.316742081448, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI87081743, Length=227, Percent_Identity=29.9559471365639, Blast_Score=109, Evalue=6e-25,
Organism=Escherichia coli, GI1787055, Length=227, Percent_Identity=29.0748898678414, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1788502, Length=227, Percent_Identity=28.6343612334802, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI1786507, Length=228, Percent_Identity=26.7543859649123, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI1788849, Length=304, Percent_Identity=25.6578947368421, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI87082096, Length=518, Percent_Identity=23.5521235521236, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1788956, Length=151, Percent_Identity=39.7350993377483, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1788381, Length=423, Percent_Identity=24.5862884160757, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI87081977, Length=190, Percent_Identity=32.1052631578947, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1786584, Length=255, Percent_Identity=29.4117647058824, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787410, Length=244, Percent_Identity=28.2786885245902, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787816, Length=156, Percent_Identity=35.2564102564103, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI145693134, Length=153, Percent_Identity=35.2941176470588, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=37.7906976744186, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787056, Length=158, Percent_Identity=35.4430379746835, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 70651; Mature: 70520

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
GLRFWSEWEQREGDGFTRAYGHSLSHRLPLLYLVVVFDAWLMAFRFWAVAPHWLALFGP
CCCCCCHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VILGNFALWRALYWMPGKVSRRSLGRLRRDLKVMSWVGAVSGFMFALWVMVLYPLGDRSA
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
QSFVHYIVAVTLFSGILGLGHSPMTALRIAIATTIPTTGQVLFSGHPNAVPVVLVQIIVT
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHH
FILLLITNGHHRDFVRLELSRQQLVRREREAAQMAQHNLLQATIDPLTGALNRRAVLARL
HHHHHHCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEELTAGGRGAEPAWLALLDLDGFKHINDTYGHAAGDAVLAAVAARLAALERVRCYGRLG
HHHHHCCCCCCCCCEEEEEECCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GDEFAAILDPALSEEAVRSLADALSDSLRAPVLHAGAILRLSGSIGVHRIVGRNASDCLE
CHHHHHHHCHHCCHHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCCHHHHHCCCHHHHHH
RADAALYKAKEQSDGTVVVFSPDDEVALQDRAAITRQFNDSDLEQRLKLVYQPIIDVESG
HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
RTTGFEAFVRWSPDGQRWLAPGQFMSLAEATGRTGELTRMVMSRALAECRAWEDGRTLSI
CCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
NLAPRDVMRAGTADALARIAEDAGAPPHSIILEVTERALLDDPRRAEDQLRAFRARGFRI
ECCHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEE
ALDDFGAGWSSLSQVHRLPLDMIKIDQELSRALVSDPGARTLVSTIISLSWQLGIDCTIE
EECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEC
GVEEEAQAATARALGIRLMQGYYFGRPDEAEQVLSNLARVA
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]