| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200634
Identifier: 87200634
GI number: 87200634
Start: 2835202
End: 2835537
Strand: Reverse
Name: 87200634
Synonym: Saro_2621
Alternate gene names: NA
Gene position: 2835537-2835202 (Counterclockwise)
Preceding gene: 87200635
Following gene: 87200633
Centisome position: 79.61
GC content: 61.9
Gene sequence:
>336_bases ATGCCCCATTTCCCGGACTATCACGCCCACGTCTATTTCGACCCGGAAGAGGCCGAGGAAGCCGGCGCACTGTGCAAGGC GATGAAGGATTCCCTGGGAATTGCCATGGGCAGGGTCCATTCGCGCCCGGTCGGCCCACATCCGCGTGGGTCATGCCAGA TGACGATCCCAGCCGATCGTATCGGCGAGGCGCTGGAATGGATGATGCTCAATCGCGGGCGCTTTACAGTGTTCTGCCAC GGCAACAGCGGTAACGACCTTGCCGACCACACCGCCCATGTCATGTGGCTCGGCCCCAGCGAAGCGCTCGACATCAGCCA GTTTCTTCCTCGCTGA
Upstream 100 bases:
>100_bases CCGACCATCGAGGACCCGGCGGTCCCCGCCGCGCTGCATTCGCTCGTCCGGCAGCACGAGAGCGCTTGATCCCTTGGCCG GGGTGGGGCAGGCACGAGCC
Downstream 100 bases:
>100_bases CGACCTTTTGCAGTTCAGCAACATTTTGTCATTGCCGCGCCCATGATGCGCAAAGTGCGATGGCCAGTTCTTGCGGGAAC CGAACACCAGACGGAGCCCC
Product: hypothetical protein
Products: NA
Alternate protein names: Dopa 4 5-Dioxygenase Family Protein; Aromatic Ring-Cleaving Dioxygenase-Like Protein; Dioxygenase; Aromatic Ring-Cleaving Dioxygenase; DOPA 4 5-Dioxygenase; Aromatic Ring-Cleaving Dioxygenase-Like; Dopa 4 5-Dioxygenase Family; DOPA-Dioxygenase-Like Protein; DOPA 4 5-Dioxygenase-Related Protein
Number of amino acids: Translated: 111; Mature: 110
Protein sequence:
>111_residues MPHFPDYHAHVYFDPEEAEEAGALCKAMKDSLGIAMGRVHSRPVGPHPRGSCQMTIPADRIGEALEWMMLNRGRFTVFCH GNSGNDLADHTAHVMWLGPSEALDISQFLPR
Sequences:
>Translated_111_residues MPHFPDYHAHVYFDPEEAEEAGALCKAMKDSLGIAMGRVHSRPVGPHPRGSCQMTIPADRIGEALEWMMLNRGRFTVFCH GNSGNDLADHTAHVMWLGPSEALDISQFLPR >Mature_110_residues PHFPDYHAHVYFDPEEAEEAGALCKAMKDSLGIAMGRVHSRPVGPHPRGSCQMTIPADRIGEALEWMMLNRGRFTVFCHG NSGNDLADHTAHVMWLGPSEALDISQFLPR
Specific function: Unknown
COG id: COG3805
COG function: function code Q; Aromatic ring-cleaving dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12341; Mature: 12210
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 6.3 %Met (Translated Protein) 9.0 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 5.5 %Met (Mature Protein) 8.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHFPDYHAHVYFDPEEAEEAGALCKAMKDSLGIAMGRVHSRPVGPHPRGSCQMTIPADR CCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHECCCCCCCCCCCCCCCEEEECCHHH IGEALEWMMLNRGRFTVFCHGNSGNDLADHTAHVMWLGPSEALDISQFLPR HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHCCC >Mature Secondary Structure PHFPDYHAHVYFDPEEAEEAGALCKAMKDSLGIAMGRVHSRPVGPHPRGSCQMTIPADR CCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHECCCCCCCCCCCCCCCEEEECCHHH IGEALEWMMLNRGRFTVFCHGNSGNDLADHTAHVMWLGPSEALDISQFLPR HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA