| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is prpE [C]
Identifier: 87200635
GI number: 87200635
Start: 2835569
End: 2837497
Strand: Reverse
Name: prpE [C]
Synonym: Saro_2622
Alternate gene names: 87200635
Gene position: 2837497-2835569 (Counterclockwise)
Preceding gene: 87200636
Following gene: 87200634
Centisome position: 79.67
GC content: 66.56
Gene sequence:
>1929_bases TTGGTCCGATACCCGCTCCAACCGTTTGAAGAGTCGGGTGAGGACATGAGCGAAGCATACGACCGGGCATGGCAGGCCAG CATCACCGATCCGCAGGCTTTCTGGGGTGAAGCTGCCAGGGCGCTTGACTGGACCTCGCCCCCGTCCGCCACTTTCACGC AAGACGACGGCTGGTTCCCCGGCGGAACGCTCAACACCGCATACAACTGCCTGGACCGCCACGTTGAAGCGGGGTGGGGC GATGCCATCGCGCTGGTCTACGACAGCCCCGTCACGGACACGATCCGCCGCTATTCCTATTCCGAACTTCTCGCCGAATC CGGCCGCGTCGCCGCCATGCTAGCCGCGCTCGGAGTGGAGAAGGGCGACCGCGTTATCATCTACATGCCGATGATCCCCG AGACGGTATTCGCCATGCTTGCCTGCGCGCGTCTCGGCGCGATCCACTCGGTCGTGTTCGGCGGTTTCGCACCACTCGAA CTGGCCAAGCGCATTGACGACGCGGCGCCGAAGGTTCTGCTGACTGCGTCCTGCGGCATTGAGGGCGCTCGCACCATTGC CTACAAGCCGATGGTCGACGAAGCGCTCGAACTCGCCCACCATGCGGTTGAGCGCGTCGTCCTGTTCCAGCGCGAGCGCC ACCGCGCCGACGTGATCGAACCGCGCGACATCGACTGGGATGTCCTGCGTGCCGATACTGCGAGCGATCCCGTTCCGGCA CCCGTGCCTGTCGCTTCGGCGGACCCGCTCTACATTCTCTACACTTCCGGCACGACCGGCACGCCCAAGGGCGTTGTCCG CGAGAACGGAGGGCATGCCGTCGCGCTCGCCTGGTCGATGCGCAACATCTACGGCATTGGCGCGGGCGATACCTTCTGGG CGGCCTCGGATGTCGGCTGGGTCGTCGGTCACAGCTACATCGTCTATGCTCCCCTGCTGGTCGGCGCGACGACCGTGCTG TTCGAGGGCAAGCCCGTCGGTACGCCCGATCCCGGCACGTTCTGGCGGGTCATCGTTCGACATGGCGTGAAGACCTTCTT CACCGCGCCCACCGCCATCCGCGCAATCCGCAAGGAAGACCCCGACGCGACTTTCCTGGCCCGGATCGGCACCGGCAAGT GCGAGGCCATTTTCCTCGCGGGCGAGCGCGCCGATCCCGATACGATCGGCTGGCTCGAGGACAAGTCCGGCCTCCCGGTC ATCGACCACTGGTGGCAGACCGAACTCGGCTGGCCAGCCATTGCCTCGTGCTTCGCGCTGGGCGACGTGCGCCGCAAACG CGGCAGCGCCGGGCTCCCGGTGCCCGGCTATGCCTTCGCGATCCTCGATGAATCCGGCCACCCGGTTCCCGTCGGGCACA GCGGTGCGGTCGTGATCAAGGCTCCGCTCGCTCCCGGCGCATTCCGCACGCTCTGGAACAACCACGCAGGCTACGCCAGG AACTTCGCGACCTTCGACGGGTACTATGAAACCGGGGACGCGGGCTTCATCGATGAAGAGGGCTTCGTCCACATCATGGG GCGTACGGATGACATCATCAACGTCGCCGGGCACCGCCTTTCCACCGGGCAGATGGAGCAGATCGTTGCCGCCGTCGACG GCGTTGCCGAATGCGCGGTGATCGGCGCGGACGATGCGATCAAGGGCATGGTGCCCATCGCCTTCGTCGTGCCCCGCGCG GGCTTTGACGGCGACGCCACGCTCGCAAAGCGGGTGATCGCCGCCGTGAGGGCGGAACTGGGCGCGGTCGCGGCGCTCAA GACCGCGTTCGTCGCCTCCGGCCTGCCCAAGACCCGCTCGGGCAAGATCCTGCGCAATCTCCTGCGCAAGATCGTCAACG GCGAGGAATGGACTGTGCCGCCGACCATCGAGGACCCGGCGGTCCCCGCCGCGCTGCATTCGCTCGTCCGGCAGCACGAG AGCGCTTGA
Upstream 100 bases:
>100_bases GATCGTGGCCGCCGCCACTTGCGTCATAGGCCTGGTGTTCCTGCCGGAGACGTACAAGCGGAGCATCGACGACTAAGGTC TTACTGGAGCGGGTAGCGGT
Downstream 100 bases:
>100_bases TCCCTTGGCCGGGGTGGGGCAGGCACGAGCCATGCCCCATTTCCCGGACTATCACGCCCACGTCTATTTCGACCCGGAAG AGGCCGAGGAAGCCGGCGCA
Product: AMP-dependent synthetase and ligase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 642; Mature: 642
Protein sequence:
>642_residues MVRYPLQPFEESGEDMSEAYDRAWQASITDPQAFWGEAARALDWTSPPSATFTQDDGWFPGGTLNTAYNCLDRHVEAGWG DAIALVYDSPVTDTIRRYSYSELLAESGRVAAMLAALGVEKGDRVIIYMPMIPETVFAMLACARLGAIHSVVFGGFAPLE LAKRIDDAAPKVLLTASCGIEGARTIAYKPMVDEALELAHHAVERVVLFQRERHRADVIEPRDIDWDVLRADTASDPVPA PVPVASADPLYILYTSGTTGTPKGVVRENGGHAVALAWSMRNIYGIGAGDTFWAASDVGWVVGHSYIVYAPLLVGATTVL FEGKPVGTPDPGTFWRVIVRHGVKTFFTAPTAIRAIRKEDPDATFLARIGTGKCEAIFLAGERADPDTIGWLEDKSGLPV IDHWWQTELGWPAIASCFALGDVRRKRGSAGLPVPGYAFAILDESGHPVPVGHSGAVVIKAPLAPGAFRTLWNNHAGYAR NFATFDGYYETGDAGFIDEEGFVHIMGRTDDIINVAGHRLSTGQMEQIVAAVDGVAECAVIGADDAIKGMVPIAFVVPRA GFDGDATLAKRVIAAVRAELGAVAALKTAFVASGLPKTRSGKILRNLLRKIVNGEEWTVPPTIEDPAVPAALHSLVRQHE SA
Sequences:
>Translated_642_residues MVRYPLQPFEESGEDMSEAYDRAWQASITDPQAFWGEAARALDWTSPPSATFTQDDGWFPGGTLNTAYNCLDRHVEAGWG DAIALVYDSPVTDTIRRYSYSELLAESGRVAAMLAALGVEKGDRVIIYMPMIPETVFAMLACARLGAIHSVVFGGFAPLE LAKRIDDAAPKVLLTASCGIEGARTIAYKPMVDEALELAHHAVERVVLFQRERHRADVIEPRDIDWDVLRADTASDPVPA PVPVASADPLYILYTSGTTGTPKGVVRENGGHAVALAWSMRNIYGIGAGDTFWAASDVGWVVGHSYIVYAPLLVGATTVL FEGKPVGTPDPGTFWRVIVRHGVKTFFTAPTAIRAIRKEDPDATFLARIGTGKCEAIFLAGERADPDTIGWLEDKSGLPV IDHWWQTELGWPAIASCFALGDVRRKRGSAGLPVPGYAFAILDESGHPVPVGHSGAVVIKAPLAPGAFRTLWNNHAGYAR NFATFDGYYETGDAGFIDEEGFVHIMGRTDDIINVAGHRLSTGQMEQIVAAVDGVAECAVIGADDAIKGMVPIAFVVPRA GFDGDATLAKRVIAAVRAELGAVAALKTAFVASGLPKTRSGKILRNLLRKIVNGEEWTVPPTIEDPAVPAALHSLVRQHE SA >Mature_642_residues MVRYPLQPFEESGEDMSEAYDRAWQASITDPQAFWGEAARALDWTSPPSATFTQDDGWFPGGTLNTAYNCLDRHVEAGWG DAIALVYDSPVTDTIRRYSYSELLAESGRVAAMLAALGVEKGDRVIIYMPMIPETVFAMLACARLGAIHSVVFGGFAPLE LAKRIDDAAPKVLLTASCGIEGARTIAYKPMVDEALELAHHAVERVVLFQRERHRADVIEPRDIDWDVLRADTASDPVPA PVPVASADPLYILYTSGTTGTPKGVVRENGGHAVALAWSMRNIYGIGAGDTFWAASDVGWVVGHSYIVYAPLLVGATTVL FEGKPVGTPDPGTFWRVIVRHGVKTFFTAPTAIRAIRKEDPDATFLARIGTGKCEAIFLAGERADPDTIGWLEDKSGLPV IDHWWQTELGWPAIASCFALGDVRRKRGSAGLPVPGYAFAILDESGHPVPVGHSGAVVIKAPLAPGAFRTLWNNHAGYAR NFATFDGYYETGDAGFIDEEGFVHIMGRTDDIINVAGHRLSTGQMEQIVAAVDGVAECAVIGADDAIKGMVPIAFVVPRA GFDGDATLAKRVIAAVRAELGAVAALKTAFVASGLPKTRSGKILRNLLRKIVNGEEWTVPPTIEDPAVPAALHSLVRQHE SA
Specific function: Catalyzes The Synthesis Of Propionyl-CoA From Propionate And CoA. Also Converts Acetate To Acetyl-CoA But With A Lower Specific Activity (By Similarity). [C]
COG id: COG0365
COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI13375727, Length=627, Percent_Identity=48.1658692185008, Blast_Score=616, Evalue=1e-176, Organism=Homo sapiens, GI28416953, Length=622, Percent_Identity=36.9774919614148, Blast_Score=367, Evalue=1e-101, Organism=Homo sapiens, GI8923896, Length=660, Percent_Identity=34.8484848484849, Blast_Score=360, Evalue=2e-99, Organism=Homo sapiens, GI253970489, Length=673, Percent_Identity=34.3239227340267, Blast_Score=358, Evalue=6e-99, Organism=Homo sapiens, GI42544132, Length=529, Percent_Identity=26.0869565217391, Blast_Score=160, Evalue=3e-39, Organism=Homo sapiens, GI38505220, Length=527, Percent_Identity=26.3757115749526, Blast_Score=158, Evalue=1e-38, Organism=Homo sapiens, GI115511026, Length=528, Percent_Identity=25.3787878787879, Blast_Score=157, Evalue=2e-38, Organism=Homo sapiens, GI58082049, Length=529, Percent_Identity=25.5198487712665, Blast_Score=148, Evalue=1e-35, Organism=Homo sapiens, GI157311624, Length=529, Percent_Identity=24.952741020794, Blast_Score=145, Evalue=2e-34, Organism=Homo sapiens, GI157311622, Length=529, Percent_Identity=24.952741020794, Blast_Score=145, Evalue=2e-34, Organism=Homo sapiens, GI122937307, Length=529, Percent_Identity=27.2211720226843, Blast_Score=144, Evalue=2e-34, Organism=Homo sapiens, GI31982927, Length=622, Percent_Identity=24.4372990353698, Blast_Score=142, Evalue=1e-33, Organism=Homo sapiens, GI195947378, Length=430, Percent_Identity=25.3488372093023, Blast_Score=106, Evalue=6e-23, Organism=Homo sapiens, GI42544134, Length=344, Percent_Identity=22.6744186046512, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI187761345, Length=409, Percent_Identity=26.161369193154, Blast_Score=77, Evalue=6e-14, Organism=Homo sapiens, GI187761343, Length=409, Percent_Identity=26.161369193154, Blast_Score=77, Evalue=6e-14, Organism=Escherichia coli, GI1786529, Length=624, Percent_Identity=41.9871794871795, Blast_Score=450, Evalue=1e-127, Organism=Escherichia coli, GI1790505, Length=631, Percent_Identity=39.7781299524564, Blast_Score=410, Evalue=1e-115, Organism=Escherichia coli, GI221142682, Length=541, Percent_Identity=24.5841035120148, Blast_Score=120, Evalue=3e-28, Organism=Escherichia coli, GI145693145, Length=519, Percent_Identity=23.5067437379576, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1788107, Length=549, Percent_Identity=25.1366120218579, Blast_Score=96, Evalue=5e-21, Organism=Escherichia coli, GI1786801, Length=458, Percent_Identity=24.8908296943231, Blast_Score=96, Evalue=6e-21, Organism=Caenorhabditis elegans, GI71982997, Length=629, Percent_Identity=34.8171701112878, Blast_Score=330, Evalue=1e-90, Organism=Caenorhabditis elegans, GI71983001, Length=629, Percent_Identity=34.8171701112878, Blast_Score=330, Evalue=2e-90, Organism=Caenorhabditis elegans, GI32563687, Length=525, Percent_Identity=24.7619047619048, Blast_Score=122, Evalue=6e-28, Organism=Caenorhabditis elegans, GI17558820, Length=527, Percent_Identity=23.1499051233397, Blast_Score=113, Evalue=3e-25, Organism=Caenorhabditis elegans, GI71985884, Length=572, Percent_Identity=23.9510489510489, Blast_Score=113, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17569507, Length=594, Percent_Identity=22.7272727272727, Blast_Score=102, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17560140, Length=539, Percent_Identity=23.0055658627087, Blast_Score=100, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17557194, Length=553, Percent_Identity=24.5931283905967, Blast_Score=100, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17531443, Length=545, Percent_Identity=22.3853211009174, Blast_Score=92, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17538037, Length=571, Percent_Identity=23.6427320490368, Blast_Score=90, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17560308, Length=569, Percent_Identity=24.9560632688928, Blast_Score=90, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17559526, Length=532, Percent_Identity=22.9323308270677, Blast_Score=89, Evalue=7e-18, Organism=Saccharomyces cerevisiae, GI6323182, Length=662, Percent_Identity=36.8580060422961, Blast_Score=382, Evalue=1e-106, Organism=Saccharomyces cerevisiae, GI6319264, Length=626, Percent_Identity=36.1022364217252, Blast_Score=378, Evalue=1e-105, Organism=Saccharomyces cerevisiae, GI6319699, Length=547, Percent_Identity=25.2285191956124, Blast_Score=114, Evalue=6e-26, Organism=Drosophila melanogaster, GI21355225, Length=631, Percent_Identity=42.3137876386688, Blast_Score=518, Evalue=1e-147, Organism=Drosophila melanogaster, GI24667955, Length=624, Percent_Identity=37.1794871794872, Blast_Score=374, Evalue=1e-103, Organism=Drosophila melanogaster, GI62472339, Length=537, Percent_Identity=38.3612662942272, Blast_Score=331, Evalue=7e-91, Organism=Drosophila melanogaster, GI24667959, Length=501, Percent_Identity=37.7245508982036, Blast_Score=303, Evalue=4e-82, Organism=Drosophila melanogaster, GI24648260, Length=399, Percent_Identity=23.0576441102757, Blast_Score=88, Evalue=2e-17, Organism=Drosophila melanogaster, GI24648253, Length=518, Percent_Identity=24.3243243243243, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI24648255, Length=518, Percent_Identity=24.3243243243243, Blast_Score=86, Evalue=9e-17, Organism=Drosophila melanogaster, GI21356947, Length=380, Percent_Identity=22.6315789473684, Blast_Score=82, Evalue=2e-15, Organism=Drosophila melanogaster, GI24653035, Length=467, Percent_Identity=23.5546038543897, Blast_Score=80, Evalue=5e-15, Organism=Drosophila melanogaster, GI161076582, Length=488, Percent_Identity=23.7704918032787, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI21355181, Length=555, Percent_Identity=22.5225225225225, Blast_Score=76, Evalue=6e-14, Organism=Drosophila melanogaster, GI21356441, Length=392, Percent_Identity=22.4489795918367, Blast_Score=74, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: 6.2.1.17 [C]
Molecular weight: Translated: 68963; Mature: 68963
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRYPLQPFEESGEDMSEAYDRAWQASITDPQAFWGEAARALDWTSPPSATFTQDDGWFP CCCCCCCCHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC GGTLNTAYNCLDRHVEAGWGDAIALVYDSPVTDTIRRYSYSELLAESGRVAAMLAALGVE CCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC KGDRVIIYMPMIPETVFAMLACARLGAIHSVVFGGFAPLELAKRIDDAAPKVLLTASCGI CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCC EGARTIAYKPMVDEALELAHHAVERVVLFQRERHRADVIEPRDIDWDVLRADTASDPVPA CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEECCCCCCCCCC PVPVASADPLYILYTSGTTGTPKGVVRENGGHAVALAWSMRNIYGIGAGDTFWAASDVGW CCCCCCCCCEEEEEECCCCCCCCCCEEECCCCEEEEEEEECCEEECCCCCCEEECCCCCH VVGHSYIVYAPLLVGATTVLFEGKPVGTPDPGTFWRVIVRHGVKTFFTAPTAIRAIRKED HHCCCHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCHHHHHCCHHHHHHHHCCC PDATFLARIGTGKCEAIFLAGERADPDTIGWLEDKSGLPVIDHWWQTELGWPAIASCFAL CCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEHHHHCCCCCCHHHHHHHHH GDVRRKRGSAGLPVPGYAFAILDESGHPVPVGHSGAVVIKAPLAPGAFRTLWNNHAGYAR HHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCHHC NFATFDGYYETGDAGFIDEEGFVHIMGRTDDIINVAGHRLSTGQMEQIVAAVDGVAECAV CCCCCCCEEECCCCCCCCCCCEEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHCHHHEEE IGADDAIKGMVPIAFVVPRAGFDGDATLAKRVIAAVRAELGAVAALKTAFVASGLPKTRS ECCCHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GKILRNLLRKIVNGEEWTVPPTIEDPAVPAALHSLVRQHESA CHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MVRYPLQPFEESGEDMSEAYDRAWQASITDPQAFWGEAARALDWTSPPSATFTQDDGWFP CCCCCCCCHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC GGTLNTAYNCLDRHVEAGWGDAIALVYDSPVTDTIRRYSYSELLAESGRVAAMLAALGVE CCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC KGDRVIIYMPMIPETVFAMLACARLGAIHSVVFGGFAPLELAKRIDDAAPKVLLTASCGI CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCC EGARTIAYKPMVDEALELAHHAVERVVLFQRERHRADVIEPRDIDWDVLRADTASDPVPA CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEECCCCCCCCCC PVPVASADPLYILYTSGTTGTPKGVVRENGGHAVALAWSMRNIYGIGAGDTFWAASDVGW CCCCCCCCCEEEEEECCCCCCCCCCEEECCCCEEEEEEEECCEEECCCCCCEEECCCCCH VVGHSYIVYAPLLVGATTVLFEGKPVGTPDPGTFWRVIVRHGVKTFFTAPTAIRAIRKED HHCCCHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCHHHHHCCHHHHHHHHCCC PDATFLARIGTGKCEAIFLAGERADPDTIGWLEDKSGLPVIDHWWQTELGWPAIASCFAL CCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEHHHHCCCCCCHHHHHHHHH GDVRRKRGSAGLPVPGYAFAILDESGHPVPVGHSGAVVIKAPLAPGAFRTLWNNHAGYAR HHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCHHC NFATFDGYYETGDAGFIDEEGFVHIMGRTDDIINVAGHRLSTGQMEQIVAAVDGVAECAV CCCCCCCEEECCCCCCCCCCCEEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHCHHHEEE IGADDAIKGMVPIAFVVPRAGFDGDATLAKRVIAAVRAELGAVAALKTAFVASGLPKTRS ECCCHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GKILRNLLRKIVNGEEWTVPPTIEDPAVPAALHSLVRQHESA CHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043; 1339433 [H]