| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87200326
Identifier: 87200326
GI number: 87200326
Start: 2452218
End: 2453627
Strand: Reverse
Name: 87200326
Synonym: Saro_2312
Alternate gene names: NA
Gene position: 2453627-2452218 (Counterclockwise)
Preceding gene: 87200327
Following gene: 87200321
Centisome position: 68.89
GC content: 64.89
Gene sequence:
>1410_bases ATGTCTGCGTTCAAGGGGTTGAAGCCGATTCTCTATGGTGGCCGTGAAGTCTGGCCACTGGTCGAGGGCGGCAAGGGCGT GGCGGCGACGAACCACATGAGTTCCGGCGCCTGGGCGGCAGCCGGCGGCATCGGCACGGTCAGCGCGGTCAATGCCGACA GCTACGACGCCGAAGGCAAGATCGTTCCACAGGTTTATCACGCCCTCACGCGCAAGGAGCGCCACGAGGAGCTGATCAAG TACGCGATCGACGGCGCGGTCGAGCAGGTCAAGCGAGCCTATGACATCGCCAGCGGCAAGGGCGCGATCAACATCAACGT GCTGTGGGAAATGGGCGGCGCGCAGCAGGTGCTCGAGGGTGTTCTGGAAAAGACCCGCGGCCTGGTCACCGGCGTCACCT GCGGCGCCGGCATGCCGTACAAGCTGTCCGAGATCGCGGCGCGGTTCAACGTGAACTATCTGCCCATCGTGTCGTCGGGC CGTGCATTCCGCGCGCTGTGGAAGCGCGCCTACCACAAGGTTTCGCACCTGCTTGCCGCCGTGGTCTATGAAGACCCGTG GCTGGCGGGCGGCCACAATGGCCTGTCCAACGCCGAAGACCCGCGCAAGCCGGAAGACCCCTATCCGCGCGTCAAGGCGC TGCGCGACGTGATGCGCGCCGAAGGCGTTTCGGATGACGTTCCCATCGTCATGGCGGGCGGCGTCTGGTTCCTGCGGGAA TGGAACGACTGGATCGACAATCCCGAGCTTGGGGCGATTGCCTTCCAGTTCGGCACGCGCCCCCTGCTGACCGAGGAAAG CCCGATCCCCCAGGGGTGGAAGGACCACCTGCGCACGCTCGAGCCGGGCGACGTGTTGCTGCATCGCTTCTCGCCCACGG GGTTCTACTCGTCGGCGGTGCGTAATCCGTTCCTGCGCGCGCTCGAAGCGCGGTCGGAACGCCAGATTCCCTATTCGCGG GTGGAAGCCGGCGAACACACCGCGCAACTCGACGTCGGCGTAAGGGGCAAGAACTTCTGGGTGACGCCGAACGACCTGGC GCGCGCGCGCGAGTGGCACGGTGCCGGTTTCGTCCACGCCCTTCGCACGCCCGACGACACGATGGTCTTCGTGACGCCCC AGGAACGCGATGAAATCCAGCAGGACCAGAAGGACTGCATGGGCTGCCTTTCGCACTGCGGGTTCTCGTCGTGGAAGGAT CACGACGACTACACGACCGGGCGGCTTGCCGATCCGCGCAGCTTCTGCATCCAGAAGACCTTGCAGGACATCGCGCACGG CGGCGATATCGACCAGAACCTGATGTTCGCGGGCCATGCGGCATACCGCTTCAAGCAGGACCCGTTCTATTCGAACAACT TCACCCCGACGGTGAAGCAGTTGGTCGATCGCATCCTGACCGGCGACTGA
Upstream 100 bases:
>100_bases TCGTGGCTGCTTCCAGGCGACCCGAGCCGGAGGGTATAAGGCCTTGTCGACTTAAGGCGGCAAAGGGTGCGAGCGCCGAT GGCGCGTTGAAAGGAAATTG
Downstream 100 bases:
>100_bases AAGCGCTTCAGGCCGCCTTGGTATCGTCCGGGGCGGCCTCTACCGCAGGACGAGCGATCGCCCCGCCTGGCAGGCGCTTC TTGCCGGGCTTGCGGAAGTG
Product: 2-nitropropane dioxygenase
Products: NA
Alternate protein names: 2-Nitropropane Dioxygenase; 2-Nitropropane Dioxygenase Family Oxidoreductase; Oxidoreductase 2-Nitropropane Dioxygenase Family; Oxidoreductase; 2-Nitropropane Dioxygenase-Like Protein; Oxidoreductase 2-Nitropropane Dioxygenase Family Protein; Dioxygenase; 2-Nitropropane Dioxygenase Npd; Flavin-Containing Oxidoreductase; 2-Nitropropane Dioxygenase Family; Enoyl-[Acyl-Carrier Protein] Reductase; 2-Nitropropane Dioxygenase Family Protein
Number of amino acids: Translated: 469; Mature: 468
Protein sequence:
>469_residues MSAFKGLKPILYGGREVWPLVEGGKGVAATNHMSSGAWAAAGGIGTVSAVNADSYDAEGKIVPQVYHALTRKERHEELIK YAIDGAVEQVKRAYDIASGKGAININVLWEMGGAQQVLEGVLEKTRGLVTGVTCGAGMPYKLSEIAARFNVNYLPIVSSG RAFRALWKRAYHKVSHLLAAVVYEDPWLAGGHNGLSNAEDPRKPEDPYPRVKALRDVMRAEGVSDDVPIVMAGGVWFLRE WNDWIDNPELGAIAFQFGTRPLLTEESPIPQGWKDHLRTLEPGDVLLHRFSPTGFYSSAVRNPFLRALEARSERQIPYSR VEAGEHTAQLDVGVRGKNFWVTPNDLARAREWHGAGFVHALRTPDDTMVFVTPQERDEIQQDQKDCMGCLSHCGFSSWKD HDDYTTGRLADPRSFCIQKTLQDIAHGGDIDQNLMFAGHAAYRFKQDPFYSNNFTPTVKQLVDRILTGD
Sequences:
>Translated_469_residues MSAFKGLKPILYGGREVWPLVEGGKGVAATNHMSSGAWAAAGGIGTVSAVNADSYDAEGKIVPQVYHALTRKERHEELIK YAIDGAVEQVKRAYDIASGKGAININVLWEMGGAQQVLEGVLEKTRGLVTGVTCGAGMPYKLSEIAARFNVNYLPIVSSG RAFRALWKRAYHKVSHLLAAVVYEDPWLAGGHNGLSNAEDPRKPEDPYPRVKALRDVMRAEGVSDDVPIVMAGGVWFLRE WNDWIDNPELGAIAFQFGTRPLLTEESPIPQGWKDHLRTLEPGDVLLHRFSPTGFYSSAVRNPFLRALEARSERQIPYSR VEAGEHTAQLDVGVRGKNFWVTPNDLARAREWHGAGFVHALRTPDDTMVFVTPQERDEIQQDQKDCMGCLSHCGFSSWKD HDDYTTGRLADPRSFCIQKTLQDIAHGGDIDQNLMFAGHAAYRFKQDPFYSNNFTPTVKQLVDRILTGD >Mature_468_residues SAFKGLKPILYGGREVWPLVEGGKGVAATNHMSSGAWAAAGGIGTVSAVNADSYDAEGKIVPQVYHALTRKERHEELIKY AIDGAVEQVKRAYDIASGKGAININVLWEMGGAQQVLEGVLEKTRGLVTGVTCGAGMPYKLSEIAARFNVNYLPIVSSGR AFRALWKRAYHKVSHLLAAVVYEDPWLAGGHNGLSNAEDPRKPEDPYPRVKALRDVMRAEGVSDDVPIVMAGGVWFLREW NDWIDNPELGAIAFQFGTRPLLTEESPIPQGWKDHLRTLEPGDVLLHRFSPTGFYSSAVRNPFLRALEARSERQIPYSRV EAGEHTAQLDVGVRGKNFWVTPNDLARAREWHGAGFVHALRTPDDTMVFVTPQERDEIQQDQKDCMGCLSHCGFSSWKDH DDYTTGRLADPRSFCIQKTLQDIAHGGDIDQNLMFAGHAAYRFKQDPFYSNNFTPTVKQLVDRILTGD
Specific function: Unknown
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51991; Mature: 51860
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAFKGLKPILYGGREVWPLVEGGKGVAATNHMSSGAWAAAGGIGTVSAVNADSYDAEGK CCCCCCCCHHHHCCCEEEEEEECCCCCEECCCCCCCCEEECCCCCCEEEECCCCCCCCCC IVPQVYHALTRKERHEELIKYAIDGAVEQVKRAYDIASGKGAININVLWEMGGAQQVLEG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHH VLEKTRGLVTGVTCGAGMPYKLSEIAARFNVNYLPIVSSGRAFRALWKRAYHKVSHLLAA HHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH VVYEDPWLAGGHNGLSNAEDPRKPEDPYPRVKALRDVMRAEGVSDDVPIVMAGGVWFLRE HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEC WNDWIDNPELGAIAFQFGTRPLLTEESPIPQGWKDHLRTLEPGDVLLHRFSPTGFYSSAV HHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCHHEEEECCCCCHHHHHH RNPFLRALEARSERQIPYSRVEAGEHTAQLDVGVRGKNFWVTPNDLARAREWHGAGFVHA HHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCEEEECCHHHHHHHHHCCCCEEEE LRTPDDTMVFVTPQERDEIQQDQKDCMGCLSHCGFSSWKDHDDYTTGRLADPRSFCIQKT ECCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH LQDIAHGGDIDQNLMFAGHAAYRFKQDPFYSNNFTPTVKQLVDRILTGD HHHHHCCCCCCCCCEEECCHHHEECCCCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure SAFKGLKPILYGGREVWPLVEGGKGVAATNHMSSGAWAAAGGIGTVSAVNADSYDAEGK CCCCCCCHHHHCCCEEEEEEECCCCCEECCCCCCCCEEECCCCCCEEEECCCCCCCCCC IVPQVYHALTRKERHEELIKYAIDGAVEQVKRAYDIASGKGAININVLWEMGGAQQVLEG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHH VLEKTRGLVTGVTCGAGMPYKLSEIAARFNVNYLPIVSSGRAFRALWKRAYHKVSHLLAA HHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH VVYEDPWLAGGHNGLSNAEDPRKPEDPYPRVKALRDVMRAEGVSDDVPIVMAGGVWFLRE HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEC WNDWIDNPELGAIAFQFGTRPLLTEESPIPQGWKDHLRTLEPGDVLLHRFSPTGFYSSAV HHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCHHEEEECCCCCHHHHHH RNPFLRALEARSERQIPYSRVEAGEHTAQLDVGVRGKNFWVTPNDLARAREWHGAGFVHA HHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCEEEECCHHHHHHHHHCCCCEEEE LRTPDDTMVFVTPQERDEIQQDQKDCMGCLSHCGFSSWKDHDDYTTGRLADPRSFCIQKT ECCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH LQDIAHGGDIDQNLMFAGHAAYRFKQDPFYSNNFTPTVKQLVDRILTGD HHHHHCCCCCCCCCEEECCHHHEECCCCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA