| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200321
Identifier: 87200321
GI number: 87200321
Start: 2447597
End: 2448118
Strand: Reverse
Name: 87200321
Synonym: Saro_2307
Alternate gene names: NA
Gene position: 2448118-2447597 (Counterclockwise)
Preceding gene: 87200326
Following gene: 87200319
Centisome position: 68.74
GC content: 68.58
Gene sequence:
>522_bases ATGGGCCATTTTTGCAACGGCAGGAGCATGAACAGGAACCTTGCCCGACGATTCCGGACCGTTCTTGCGGCAGTTGCCGC GATAGCGCTTGGGGCTGCGGCGCCAGCGCTTGCCCAGGATGCGGACGATGGCGTGCCGTACTGGGTGTCGACCAGCAAGG ACAAGGCCAACATGCGTGTCGGGCCCGGCCGCGACTACCGCATCAGCTGGACCTACGTGCGCAAGGGCGTTCCCCTGAAG GTGCTGCGCGTGATGGGCGGATGGCGGCTGGTCGAGGACCCCGACGGGGCGCGCGGCTGGATCCTTGCGCAGTTCCTCAG CCGCGAGCGCGCCGGGATCGTCAAGGGCGGCGTCACCGGCCTTCGCGAGAAGAAGGACGGCAGCGGACGCCTGCTGTGGC GCGTTGCGCCGGGGGTGATCGGCAAGGTCAAGGATTGCGACGACGGCTGGTGCGCGTTCGACGTCGGTGGCCGCAAGGGC TATGTCCGCGCGTCAAGCGTGTGGGGCGCGGGCCAGCCCTGA
Upstream 100 bases:
>100_bases GAACTGGGCATGCCGCGCCAAGCTAGGCCGAGCGGCGGGAGGCGGTCAAGCGGCGGGTACGTCTGCGGCGGTGGACAGGC TGCACCAGGGTGTTGCCCTG
Downstream 100 bases:
>100_bases GGCGCCAGCTCTGAGGCGTCCGGGCAAGGGCGATTTCCCCCGACCGCGTGGGCCGGGGGAGATGCAACGGTTTCAGACCA GCTCGATCGCGAGGGCCGTC
Product: hypothetical protein
Products: NA
Alternate protein names: Signal Peptide
Number of amino acids: Translated: 173; Mature: 172
Protein sequence:
>173_residues MGHFCNGRSMNRNLARRFRTVLAAVAAIALGAAAPALAQDADDGVPYWVSTSKDKANMRVGPGRDYRISWTYVRKGVPLK VLRVMGGWRLVEDPDGARGWILAQFLSRERAGIVKGGVTGLREKKDGSGRLLWRVAPGVIGKVKDCDDGWCAFDVGGRKG YVRASSVWGAGQP
Sequences:
>Translated_173_residues MGHFCNGRSMNRNLARRFRTVLAAVAAIALGAAAPALAQDADDGVPYWVSTSKDKANMRVGPGRDYRISWTYVRKGVPLK VLRVMGGWRLVEDPDGARGWILAQFLSRERAGIVKGGVTGLREKKDGSGRLLWRVAPGVIGKVKDCDDGWCAFDVGGRKG YVRASSVWGAGQP >Mature_172_residues GHFCNGRSMNRNLARRFRTVLAAVAAIALGAAAPALAQDADDGVPYWVSTSKDKANMRVGPGRDYRISWTYVRKGVPLKV LRVMGGWRLVEDPDGARGWILAQFLSRERAGIVKGGVTGLREKKDGSGRLLWRVAPGVIGKVKDCDDGWCAFDVGGRKGY VRASSVWGAGQP
Specific function: Unknown
COG id: COG3807
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18730; Mature: 18599
Theoretical pI: Translated: 10.97; Mature: 10.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGHFCNGRSMNRNLARRFRTVLAAVAAIALGAAAPALAQDADDGVPYWVSTSKDKANMRV CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEECCCCCCCEEE GPGRDYRISWTYVRKGVPLKVLRVMGGWRLVEDPDGARGWILAQFLSRERAGIVKGGVTG CCCCCEEEEEEEECCCCCHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCEECCCCCC LREKKDGSGRLLWRVAPGVIGKVKDCDDGWCAFDVGGRKGYVRASSVWGAGQP CCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCC >Mature Secondary Structure GHFCNGRSMNRNLARRFRTVLAAVAAIALGAAAPALAQDADDGVPYWVSTSKDKANMRV CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEECCCCCCCEEE GPGRDYRISWTYVRKGVPLKVLRVMGGWRLVEDPDGARGWILAQFLSRERAGIVKGGVTG CCCCCEEEEEEEECCCCCHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCEECCCCCC LREKKDGSGRLLWRVAPGVIGKVKDCDDGWCAFDVGGRKGYVRASSVWGAGQP CCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA