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The map label for this gene is comF [H]

Identifier: 87200124

GI number: 87200124

Start: 2244411

End: 2245220

Strand: Reverse

Name: comF [H]

Synonym: Saro_2108

Alternate gene names: 87200124

Gene position: 2245220-2244411 (Counterclockwise)

Preceding gene: 87200126

Following gene: 87200123

Centisome position: 63.04

GC content: 69.14

Gene sequence:

>810_bases
ATGTCCCTGGGCATGTCCTGGCTGTCCGCGCTCGACCCGGTGCTGGACTTCGTGTTTCCCCCGCGCTGCCCGCTGTGCGG
CGCGCCGGTCGCCGCGCATGGCGGCCTGTGCATGGCATGCTGGGACAAGCTGGAGACGCCATCGGGCGTAGCCTGCCGTT
CGTGCCAGCGCCCGATGGGCGGTAGCGACGATGCGCACGCGGAACTGGTCTGCGCGCCGTGCATGGCCGACCCTCCCCGC
CATTCAGGCATCGCGGCGGCAACGCTCTACAACGATGCCTCGCGCGCGCTCGTGCTGGCGTTCAAGCATGGGCGGCGGAT
CGGGCTTGCTCCCATGATGGCGCGCATGATCGGCCACCGCGTCCCGGCGCTCGAGGGGGACTGGCTGGTCGTGCCGGTGC
CGTTGCATCGCTGGCGGCTGATGCAGCGCGGGTTCAACCAGTCCGCATTGCTCGCGCGGCATCTGGCCGAATCGACCGGA
CAGAAACTGTTGGTCGACGGCCTCGTGCGCACCAGGGCGACACCATCGCTCGGGGGCCTGAACCGCAACAAGCGCGCGAG
GGCGCTGGCCGGATCGATCAGCGTCCACCCTGGGCGCGCGGACTGCTTGCGGCAGGCGAAGGTCCTGCTGGTCGATGACG
TGATGACCAGCGGCGCCACTACCAACGCCTGCATCACCGCCTTGCGCAGGGCAGGAGTCGCCGAAGTGCGAATCGCGTGT
TTCGCTCGCGTGCTTGACGAGGCGCTCGGTTCATCGAGGAGCGATGCTTCTGCGGTGTTGCCGGACGCTGGCGGCGAATT
GCGCGCCTGA

Upstream 100 bases:

>100_bases
GTTTCGGCGCGAAAATAGTGGGGGGTGACGTGGCCATTTCCGGGCCCTGCCTGTCCGGGGCGCTCTTGCCAAGCCTCAAG
GCGCTGTCGACAACGATGCC

Downstream 100 bases:

>100_bases
AAAAGGAAACGCCCGGAACCAGCGGCTCCGGGCGTCCTCGTGACGATCTCTGCGGGCGTTCGCGTTTCGCGATACCGATG
GCCCCCTGACCATCCCGCCT

Product: phosphoribosyltransferase

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSLGMSWLSALDPVLDFVFPPRCPLCGAPVAAHGGLCMACWDKLETPSGVACRSCQRPMGGSDDAHAELVCAPCMADPPR
HSGIAAATLYNDASRALVLAFKHGRRIGLAPMMARMIGHRVPALEGDWLVVPVPLHRWRLMQRGFNQSALLARHLAESTG
QKLLVDGLVRTRATPSLGGLNRNKRARALAGSISVHPGRADCLRQAKVLLVDDVMTSGATTNACITALRRAGVAEVRIAC
FARVLDEALGSSRSDASAVLPDAGGELRA

Sequences:

>Translated_269_residues
MSLGMSWLSALDPVLDFVFPPRCPLCGAPVAAHGGLCMACWDKLETPSGVACRSCQRPMGGSDDAHAELVCAPCMADPPR
HSGIAAATLYNDASRALVLAFKHGRRIGLAPMMARMIGHRVPALEGDWLVVPVPLHRWRLMQRGFNQSALLARHLAESTG
QKLLVDGLVRTRATPSLGGLNRNKRARALAGSISVHPGRADCLRQAKVLLVDDVMTSGATTNACITALRRAGVAEVRIAC
FARVLDEALGSSRSDASAVLPDAGGELRA
>Mature_268_residues
SLGMSWLSALDPVLDFVFPPRCPLCGAPVAAHGGLCMACWDKLETPSGVACRSCQRPMGGSDDAHAELVCAPCMADPPRH
SGIAAATLYNDASRALVLAFKHGRRIGLAPMMARMIGHRVPALEGDWLVVPVPLHRWRLMQRGFNQSALLARHLAESTGQ
KLLVDGLVRTRATPSLGGLNRNKRARALAGSISVHPGRADCLRQAKVLLVDDVMTSGATTNACITALRRAGVAEVRIACF
ARVLDEALGSSRSDASAVLPDAGGELRA

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=239, Percent_Identity=28.4518828451883, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 28486; Mature: 28354

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS00103 PUR_PYR_PR_TRANSFER ; PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLGMSWLSALDPVLDFVFPPRCPLCGAPVAAHGGLCMACWDKLETPSGVACRSCQRPMG
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHCCCCCCHHHHHHCCCCC
GSDDAHAELVCAPCMADPPRHSGIAAATLYNDASRALVLAFKHGRRIGLAPMMARMIGHR
CCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHC
VPALEGDWLVVPVPLHRWRLMQRGFNQSALLARHLAESTGQKLLVDGLVRTRATPSLGGL
CCCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
NRNKRARALAGSISVHPGRADCLRQAKVLLVDDVMTSGATTNACITALRRAGVAEVRIAC
CCCCHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH
FARVLDEALGSSRSDASAVLPDAGGELRA
HHHHHHHHHCCCCCCCCEECCCCCCCCCC
>Mature Secondary Structure 
SLGMSWLSALDPVLDFVFPPRCPLCGAPVAAHGGLCMACWDKLETPSGVACRSCQRPMG
CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHCCCCCCHHHHHHCCCCC
GSDDAHAELVCAPCMADPPRHSGIAAATLYNDASRALVLAFKHGRRIGLAPMMARMIGHR
CCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHC
VPALEGDWLVVPVPLHRWRLMQRGFNQSALLARHLAESTGQKLLVDGLVRTRATPSLGGL
CCCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
NRNKRARALAGSISVHPGRADCLRQAKVLLVDDVMTSGATTNACITALRRAGVAEVRIAC
CCCCHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH
FARVLDEALGSSRSDASAVLPDAGGELRA
HHHHHHHHHCCCCCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]