| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is smeIM [H]
Identifier: 87199857
GI number: 87199857
Start: 1939534
End: 1940676
Strand: Direct
Name: smeIM [H]
Synonym: Saro_1840
Alternate gene names: 87199857
Gene position: 1939534-1940676 (Clockwise)
Preceding gene: 87199856
Following gene: 87199858
Centisome position: 54.46
GC content: 63.08
Gene sequence:
>1143_bases ATGGCAGTTGCAACCAAGGAACGCGCTAAGGCTCTTCGCGCGGCACCGGCAAAGGTGCTGAAGGCAGACATCGCGCTGCC CGTGAACCAGATCCTGCGCGGCGATTGCATTGCCGAGATGCGCAAGCTGCCCGACGCCTCCATCGACATGATCTTCGCCG ATCCGCCCTACAACCTCCAGCTTGGCGGCGATCTGGCTCGTCCCGATGGCAGCCATGTGGACGCCGTCACCAACGATTGG GACAAGTTCTCGAGCTTTGCCGCCTACGACAAGTTCACGCGCGAATGGCTGGTCGAGGCGCGCCGCCTGCTGAAGCCGGA TGGTTCGATCTGGGTGATCGGCAGCTACCACAACATCTTCCGCGTGGGTGCGCTGCTGCAGGATCTGGGGTTCTGGATTC TCAACGACATCATCTGGCGCAAGGCCAACCCGATGCCCAATTTCAAGGGCACCCGCTTCACCAACGCGCACGAAACGCTG ATCTGGGCGTCGAAGAGCGAGAAGTCGAAGTACACCTTCAACTATCGCGCGATGAAGACCCTGAACGACGAATTGCAGAT GCGCTCCGACTGGGTTCTGCCGATCTGTTCGGGGCCGGAGCGCCTGCGCCGCAACGGCACCAAGGCGCACCCGACGCAGA AGCCAGAGGCGCTGCTCTATCGCGTGATGCTTGCGACGACCAACAAGGGCGACGTCGTGCTGGACCCGTTTTTCGGCACT GGCACCACCGGCGCGGTGGCCAAGCGGCTTGGCCGCAACTGGATCGGCTGCGAACGCGAGGATGACTACATCGAGGTCGC CAACGAGCGCATCGAACTGGCGCTGCCGCTTGACGAAAGCGCGCTGACGACGATGCAGTCGAAGCGTAGCGCGCCCAAGG TGGCGTTCGGCGCACTGGTCGAAAGCGGTTATCTGGCTCCCGGCACGCGGCTCACGGCCAAGAAGGGGCGGTTCAATGCG GTCGTTCGCGCCGACGGGTCGCTTCAGTCCGAAGCCGAGATCGGTTCGATCCACGGGCTCGGGGCAAAGCTCCAGGGTGC GCCTTCGTGCAATGGCTGGACGTTCTGGCATGTCGAGCACGAAGGCGAGGTGAAGCCGATCGACGCTCTGCGCCAGCTCT ACCTGCTCGCCGTGGAAGATTGA
Upstream 100 bases:
>100_bases CGCTGGCTGCGACTCGCCGAAATCTGGCGAGTCGCAGCTTGACGGCGAGTCCGCGATGACTCAAACGGTGGGCTTATCCA CAAGGGGTCAGGGACTAGAT
Downstream 100 bases:
>100_bases TCCTCTTGCCAGCGTACTGCGCCCCCGCCTAGGCGGGGGCAGGGGCAAAGGGCCCTGGCGGGGACTGGAAATGCTGAAAG TCTACATTCGTCCGATCGCG
Product: DNA methylase N-4/N-6
Products: NA
Alternate protein names: M.SmeI; Adenine-specific methyltransferase SmeIP; M.CcrMI ortholog; Modification methylase SmeIP; M.SmeIP [H]
Number of amino acids: Translated: 380; Mature: 379
Protein sequence:
>380_residues MAVATKERAKALRAAPAKVLKADIALPVNQILRGDCIAEMRKLPDASIDMIFADPPYNLQLGGDLARPDGSHVDAVTNDW DKFSSFAAYDKFTREWLVEARRLLKPDGSIWVIGSYHNIFRVGALLQDLGFWILNDIIWRKANPMPNFKGTRFTNAHETL IWASKSEKSKYTFNYRAMKTLNDELQMRSDWVLPICSGPERLRRNGTKAHPTQKPEALLYRVMLATTNKGDVVLDPFFGT GTTGAVAKRLGRNWIGCEREDDYIEVANERIELALPLDESALTTMQSKRSAPKVAFGALVESGYLAPGTRLTAKKGRFNA VVRADGSLQSEAEIGSIHGLGAKLQGAPSCNGWTFWHVEHEGEVKPIDALRQLYLLAVED
Sequences:
>Translated_380_residues MAVATKERAKALRAAPAKVLKADIALPVNQILRGDCIAEMRKLPDASIDMIFADPPYNLQLGGDLARPDGSHVDAVTNDW DKFSSFAAYDKFTREWLVEARRLLKPDGSIWVIGSYHNIFRVGALLQDLGFWILNDIIWRKANPMPNFKGTRFTNAHETL IWASKSEKSKYTFNYRAMKTLNDELQMRSDWVLPICSGPERLRRNGTKAHPTQKPEALLYRVMLATTNKGDVVLDPFFGT GTTGAVAKRLGRNWIGCEREDDYIEVANERIELALPLDESALTTMQSKRSAPKVAFGALVESGYLAPGTRLTAKKGRFNA VVRADGSLQSEAEIGSIHGLGAKLQGAPSCNGWTFWHVEHEGEVKPIDALRQLYLLAVED >Mature_379_residues AVATKERAKALRAAPAKVLKADIALPVNQILRGDCIAEMRKLPDASIDMIFADPPYNLQLGGDLARPDGSHVDAVTNDWD KFSSFAAYDKFTREWLVEARRLLKPDGSIWVIGSYHNIFRVGALLQDLGFWILNDIIWRKANPMPNFKGTRFTNAHETLI WASKSEKSKYTFNYRAMKTLNDELQMRSDWVLPICSGPERLRRNGTKAHPTQKPEALLYRVMLATTNKGDVVLDPFFGTG TTGAVAKRLGRNWIGCEREDDYIEVANERIELALPLDESALTTMQSKRSAPKVAFGALVESGYLAPGTRLTAKKGRFNAV VRADGSLQSEAEIGSIHGLGAKLQGAPSCNGWTFWHVEHEGEVKPIDALRQLYLLAVED
Specific function: This methylase recognizes the double-stranded sequence GANTC and causes specific methylation on A-2 on both strands. Ccrm-mediated methylation has important cellular functions. Appears to contribute to the accurate cell-cycle control of DNA replication an
COG id: COG0863
COG function: function code L; DNA modification methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI87082238, Length=281, Percent_Identity=30.2491103202847, Blast_Score=122, Evalue=3e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002941 - InterPro: IPR002052 - InterPro: IPR001091 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 42300; Mature: 42169
Theoretical pI: Translated: 8.82; Mature: 8.82
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVATKERAKALRAAPAKVLKADIALPVNQILRGDCIAEMRKLPDASIDMIFADPPYNLQ CCCCCHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEE LGGDLARPDGSHVDAVTNDWDKFSSFAAYDKFTREWLVEARRLLKPDGSIWVIGSYHNIF ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH RVGALLQDLGFWILNDIIWRKANPMPNFKGTRFTNAHETLIWASKSEKSKYTFNYRAMKT HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEECCCCCCEEEEEEHHHHH LNDELQMRSDWVLPICSGPERLRRNGTKAHPTQKPEALLYRVMLATTNKGDVVLDPFFGT HHHHHHHCCCCEEEECCCHHHHHHCCCCCCCCCCHHHHHHHHHHEECCCCCEEECCCCCC GTTGAVAKRLGRNWIGCEREDDYIEVANERIELALPLDESALTTMQSKRSAPKVAFGALV CCHHHHHHHHCCCCCCCCCCCCHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHH ESGYLAPGTRLTAKKGRFNAVVRADGSLQSEAEIGSIHGLGAKLQGAPSCNGWTFWHVEH HCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEEC EGEVKPIDALRQLYLLAVED CCCCCHHHHHHHHHEEEECC >Mature Secondary Structure AVATKERAKALRAAPAKVLKADIALPVNQILRGDCIAEMRKLPDASIDMIFADPPYNLQ CCCCHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEE LGGDLARPDGSHVDAVTNDWDKFSSFAAYDKFTREWLVEARRLLKPDGSIWVIGSYHNIF ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH RVGALLQDLGFWILNDIIWRKANPMPNFKGTRFTNAHETLIWASKSEKSKYTFNYRAMKT HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEECCCCCCEEEEEEHHHHH LNDELQMRSDWVLPICSGPERLRRNGTKAHPTQKPEALLYRVMLATTNKGDVVLDPFFGT HHHHHHHCCCCEEEECCCHHHHHHCCCCCCCCCCHHHHHHHHHHEECCCCCEEECCCCCC GTTGAVAKRLGRNWIGCEREDDYIEVANERIELALPLDESALTTMQSKRSAPKVAFGALV CCHHHHHHHHCCCCCCCCCCCCHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHH ESGYLAPGTRLTAKKGRFNAVVRADGSLQSEAEIGSIHGLGAKLQGAPSCNGWTFWHVEH HCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEEC EGEVKPIDALRQLYLLAVED CCCCCHHHHHHHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9294447; 11481430 [H]