| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199522
Identifier: 87199522
GI number: 87199522
Start: 1547734
End: 1549518
Strand: Direct
Name: 87199522
Synonym: Saro_1504
Alternate gene names: NA
Gene position: 1547734-1549518 (Clockwise)
Preceding gene: 87199521
Following gene: 87199523
Centisome position: 43.46
GC content: 65.15
Gene sequence:
>1785_bases ATGACAGCTTCCCTCGATCTCTGGCCAATCGGCAACTGCCAGGTTTCGGCGCTGGTCGATACCTCGGGCGCATTTGTCTG GGGCTGCATTCCGCGGGTCGATGGTGATCCGTTCTTCTCGGCCCTGCTGGGCGGTGAGATGCCGCGGGAAGGCCTTTGGG CAATCGATCTCGAAGACCGGCTGGAAACCACCCAAAGCTATCTGCGCAATACCCCGATCCTCGTCACCCGCCACCGCGAT GCCAATGGCGGTGAGATCGAGGTGCTGGACTTCTGCCCATATCTCCCGCGCAATGGCCGCACCTATCGCCCCGTGGCCTA TGCCCGGATCGTGCGCCCCATCGCGGGCAGCCCGCGCATCCGCATGCGCCTGCGGCCTACCTGCGGGTGGGGCAACACCT GCCGGATGACCATCGGCGGATCGAACCATATCCGCTACCTGTCCGAAGCCATGACGATGCGGCTGACCACGTCCGCACCG GTCGGCCTCGTTGCCGAGGAACGGGCCTTCCGCCTTGAACAGGCGCACTACTTCTTCCTCGGCCCGGACGAGAGCTTCTC GGGCAACCTTGCCGAAACGCTCGAACGGATGCTCGAGGCAACCGCTGCCGAGTGGCGCCACTGGGTGCGGGGCCTGGCCA CGCCGGTCGAATGGCAGGACGTGGTGATCCGGTCGGCCATAACGCTCAAGCTGTGCCAGCACGAGGAAACCGGCGCCATC GTAGCCGCGCTGACCACCTCGATCCCCGAACATGCCGGATCGCAGCGGAACTGGGACTATCGCTACTGCTGGATCCGCGA TGCCTACTACACCGTGCAGGCCCTCAATCGCCTCGGCGCGCTGGACGTGCTCGAAGGTTATCTCGCCTACTTGCGCAATG TCGTCGACAATGCGCGCGGTGGCCATATCCAGCCGCTCTATGGCGTGCTCGGCGAAGCGAAGCTGGACGAAGGCCTTGCC GAAAGGCTGCCCGGCTATCGCGCGATGGGGCCGGTCCGCATCGGCAACGCAGCCTGGTCGCAGGTTCAGCACGATGCCTA TGGCCAGATCGTCCTGTCCAACACGCAGGCGTTCCTTGACCAGCGCTTGCTGCGCATGTCCGGCCTCGCCGATTTTGAAG CGCTGGAAAAGGTCGGCGAAAGGGCATGGGCCCTGTTCGACAAGCCCGATGCCGGCCTGTGGGAACTGCGCACCCGCCAG TCGGTCCATACATATTCGGCGGCGATGTGCTGGGCGGCCTGTGACCGGCTGGGCAACGCCGCGCACGCGATTGGCCTTGA TGACCGCGCGGCCTTCTGGGGCGAGCGCGCAGCCGCGATCCGCGAGCGGATAGAGCAGGCCGCGTGGTGTCCCGAGACCG AGCGGATGTCGGCCACGTTCTCGGGCGACGATCTCGATGCAAGCGTGATCCAGTTGCTCGACCTGCGCTTCCTCGCGCCG GACGATCCGCGCTTCGTCTCCACGCTGGCCGCCATCGAACAGGGCCTGCGGCGCGGATCGCACATGCTGCGCTATGCCAC CGAGGACGATTTCGGCCTTCCCGAAACCGCCTTCAACGTCTGCACCTTCTGGCTGATAGAAGCCCTGCACCTGACCGGAC GCCGTGCCGAAGCCCGCGCGCTCTACGAAGAGATGCTCAGCCGCCGCACCCAGTCGGGCCTCCTTTCGGAGGACATCGAT CCGGCAACCGGCGAACTCTGGGGAAACTACCCGCAGACCTACTCACTTGTCGGCCTGATCAACTGCGCCGTCCTGCTGAG CAAACCGTGGAATACCGTACGATGA
Upstream 100 bases:
>100_bases GCGGCCACGCGATCCTTGTCGGCGAACCCAGGCCCACGCTTGCCACCTTCCGCCTGCGCTCGCCGGAGGAACTTCGCGAA TGGCTCTGGAGAGCAACGGT
Downstream 100 bases:
>100_bases GCAGGCTGATAGTCATTTCGAACCGCGTCAGCGCCGGTGGGGGCGCGCAAGGCGGACTTGCCGTCGCGCTTTCGGCGGCC TTGCGCGAACATGGAGGGAT
Product: glycoside hydrolase 15-like protein
Products: NA
Alternate protein names: Glycosyl Hydrolase; Glycosyl Hydrolase Family; Glycoside Hydrolase Family; Glycosy Hydrolase Family Protein; Trehalose-Phosphatase; Glucoamylase; Glycoside Hydrolase Family Protein; Trehalose-Phosphatase/Glycoside Hydrolase; Glucoamylase-Like Glycosyl Hydrolase; Trehalose Phosphatase; Glucoamylase Or Related Glycosyl Hydrolase; Six-Hairpin Glycosidase-Like Protein; Trehalose 6-Phosphatase; Trehalose-Phosphatase/ Glycoside Hydrolase; Glucoamylase Or Related Glycosyl Hydrolase Protein; HAD Family Hydrolase; Glycosyl Hydrolase Glycosyl Hydrolase Family; Glycosyl Hydrolase Protein; Trehalose-6-Phosphate Phophatase; Glycosyl Hydrolase Family Protein; Glucoamylase-Related Protein Trehalase
Number of amino acids: Translated: 594; Mature: 593
Protein sequence:
>594_residues MTASLDLWPIGNCQVSALVDTSGAFVWGCIPRVDGDPFFSALLGGEMPREGLWAIDLEDRLETTQSYLRNTPILVTRHRD ANGGEIEVLDFCPYLPRNGRTYRPVAYARIVRPIAGSPRIRMRLRPTCGWGNTCRMTIGGSNHIRYLSEAMTMRLTTSAP VGLVAEERAFRLEQAHYFFLGPDESFSGNLAETLERMLEATAAEWRHWVRGLATPVEWQDVVIRSAITLKLCQHEETGAI VAALTTSIPEHAGSQRNWDYRYCWIRDAYYTVQALNRLGALDVLEGYLAYLRNVVDNARGGHIQPLYGVLGEAKLDEGLA ERLPGYRAMGPVRIGNAAWSQVQHDAYGQIVLSNTQAFLDQRLLRMSGLADFEALEKVGERAWALFDKPDAGLWELRTRQ SVHTYSAAMCWAACDRLGNAAHAIGLDDRAAFWGERAAAIRERIEQAAWCPETERMSATFSGDDLDASVIQLLDLRFLAP DDPRFVSTLAAIEQGLRRGSHMLRYATEDDFGLPETAFNVCTFWLIEALHLTGRRAEARALYEEMLSRRTQSGLLSEDID PATGELWGNYPQTYSLVGLINCAVLLSKPWNTVR
Sequences:
>Translated_594_residues MTASLDLWPIGNCQVSALVDTSGAFVWGCIPRVDGDPFFSALLGGEMPREGLWAIDLEDRLETTQSYLRNTPILVTRHRD ANGGEIEVLDFCPYLPRNGRTYRPVAYARIVRPIAGSPRIRMRLRPTCGWGNTCRMTIGGSNHIRYLSEAMTMRLTTSAP VGLVAEERAFRLEQAHYFFLGPDESFSGNLAETLERMLEATAAEWRHWVRGLATPVEWQDVVIRSAITLKLCQHEETGAI VAALTTSIPEHAGSQRNWDYRYCWIRDAYYTVQALNRLGALDVLEGYLAYLRNVVDNARGGHIQPLYGVLGEAKLDEGLA ERLPGYRAMGPVRIGNAAWSQVQHDAYGQIVLSNTQAFLDQRLLRMSGLADFEALEKVGERAWALFDKPDAGLWELRTRQ SVHTYSAAMCWAACDRLGNAAHAIGLDDRAAFWGERAAAIRERIEQAAWCPETERMSATFSGDDLDASVIQLLDLRFLAP DDPRFVSTLAAIEQGLRRGSHMLRYATEDDFGLPETAFNVCTFWLIEALHLTGRRAEARALYEEMLSRRTQSGLLSEDID PATGELWGNYPQTYSLVGLINCAVLLSKPWNTVR >Mature_593_residues TASLDLWPIGNCQVSALVDTSGAFVWGCIPRVDGDPFFSALLGGEMPREGLWAIDLEDRLETTQSYLRNTPILVTRHRDA NGGEIEVLDFCPYLPRNGRTYRPVAYARIVRPIAGSPRIRMRLRPTCGWGNTCRMTIGGSNHIRYLSEAMTMRLTTSAPV GLVAEERAFRLEQAHYFFLGPDESFSGNLAETLERMLEATAAEWRHWVRGLATPVEWQDVVIRSAITLKLCQHEETGAIV AALTTSIPEHAGSQRNWDYRYCWIRDAYYTVQALNRLGALDVLEGYLAYLRNVVDNARGGHIQPLYGVLGEAKLDEGLAE RLPGYRAMGPVRIGNAAWSQVQHDAYGQIVLSNTQAFLDQRLLRMSGLADFEALEKVGERAWALFDKPDAGLWELRTRQS VHTYSAAMCWAACDRLGNAAHAIGLDDRAAFWGERAAAIRERIEQAAWCPETERMSATFSGDDLDASVIQLLDLRFLAPD DPRFVSTLAAIEQGLRRGSHMLRYATEDDFGLPETAFNVCTFWLIEALHLTGRRAEARALYEEMLSRRTQSGLLSEDIDP ATGELWGNYPQTYSLVGLINCAVLLSKPWNTVR
Specific function: Unknown
COG id: COG3387
COG function: function code G; Glucoamylase and related glycosyl hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66497; Mature: 66366
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASLDLWPIGNCQVSALVDTSGAFVWGCIPRVDGDPFFSALLGGEMPREGLWAIDLEDR CCCCCEEEECCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHCCCCCCCCEEEEEHHHH LETTQSYLRNTPILVTRHRDANGGEIEVLDFCPYLPRNGRTYRPVAYARIVRPIAGSPRI HHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCE RMRLRPTCGWGNTCRMTIGGSNHIRYLSEAMTMRLTTSAPVGLVAEERAFRLEQAHYFFL EEEEECCCCCCCEEEEEECCCCHHHHHHHHHHEEEECCCCCCEEEHHHHHHHCCCEEEEE GPDESFSGNLAETLERMLEATAAEWRHWVRGLATPVEWQDVVIRSAITLKLCQHEETGAI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCE VAALTTSIPEHAGSQRNWDYRYCWIRDAYYTVQALNRLGALDVLEGYLAYLRNVVDNARG EEHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCC GHIQPLYGVLGEAKLDEGLAERLPGYRAMGPVRIGNAAWSQVQHDAYGQIVLSNTQAFLD CCCCHHHHHHCHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHCCCCEEEEECHHHHHH QRLLRMSGLADFEALEKVGERAWALFDKPDAGLWELRTRQSVHTYSAAMCWAACDRLGNA HHHHHHHCCCCHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC AHAIGLDDRAAFWGERAAAIRERIEQAAWCPETERMSATFSGDDLDASVIQLLDLRFLAP CEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCEEEECCCCCHHHHHHHHHHHHCCC DDPRFVSTLAAIEQGLRRGSHMLRYATEDDFGLPETAFNVCTFWLIEALHLTGRRAEARA CCHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH LYEEMLSRRTQSGLLSEDIDPATGELWGNYPQTYSLVGLINCAVLLSKPWNTVR HHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TASLDLWPIGNCQVSALVDTSGAFVWGCIPRVDGDPFFSALLGGEMPREGLWAIDLEDR CCCCEEEECCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHCCCCCCCCEEEEEHHHH LETTQSYLRNTPILVTRHRDANGGEIEVLDFCPYLPRNGRTYRPVAYARIVRPIAGSPRI HHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCE RMRLRPTCGWGNTCRMTIGGSNHIRYLSEAMTMRLTTSAPVGLVAEERAFRLEQAHYFFL EEEEECCCCCCCEEEEEECCCCHHHHHHHHHHEEEECCCCCCEEEHHHHHHHCCCEEEEE GPDESFSGNLAETLERMLEATAAEWRHWVRGLATPVEWQDVVIRSAITLKLCQHEETGAI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCE VAALTTSIPEHAGSQRNWDYRYCWIRDAYYTVQALNRLGALDVLEGYLAYLRNVVDNARG EEHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCC GHIQPLYGVLGEAKLDEGLAERLPGYRAMGPVRIGNAAWSQVQHDAYGQIVLSNTQAFLD CCCCHHHHHHCHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHCCCCEEEEECHHHHHH QRLLRMSGLADFEALEKVGERAWALFDKPDAGLWELRTRQSVHTYSAAMCWAACDRLGNA HHHHHHHCCCCHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC AHAIGLDDRAAFWGERAAAIRERIEQAAWCPETERMSATFSGDDLDASVIQLLDLRFLAP CEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCEEEECCCCCHHHHHHHHHHHHCCC DDPRFVSTLAAIEQGLRRGSHMLRYATEDDFGLPETAFNVCTFWLIEALHLTGRRAEARA CCHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH LYEEMLSRRTQSGLLSEDIDPATGELWGNYPQTYSLVGLINCAVLLSKPWNTVR HHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA