| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87199475
Identifier: 87199475
GI number: 87199475
Start: 1498867
End: 1499457
Strand: Direct
Name: 87199475
Synonym: Saro_1454
Alternate gene names: NA
Gene position: 1498867-1499457 (Clockwise)
Preceding gene: 87199474
Following gene: 87199476
Centisome position: 42.08
GC content: 69.71
Gene sequence:
>591_bases ATGACCGGCGACCCGCCCGGCCAGGGCGAAACCGGTTCTGCCGGTTATCGCCGACCGCCTGCCGCGACCCGCTTCGTCAA GGGGCAGAGCGGCAATCCGAGGGGACGGCCCAGCGGGCGCCACCGGCAGTTGCCGTACGATACCGTGCTGGGCCAGATGG TGACCGTGCGCGAGGACGGGCGCGAACGGCGCGTGACCGCAGCGGAGGCTTTCCTGCTGCAGCTTACCCGCAAGGGTCTT GCCGGCGACAGCGCGGCCGCGCGCGCCTCGCTCGATGCAATCGAGACCGCACGTGCAGCGCGGAGAGCAAGGGTTGTCCA ACCGTCCAGGCTGCGCGTCGTGCTCATGTCATTCGGCGTAGGCACGGCATTGCAACATCTGGGAATGGCCACCAAGCGCA ACCGGCTCGACGAAAAGCGCGTGCGTTGGGAGCTCAAGCCCTGGATCGTCGAGGCGGCGCTCGCCCGGATGGCGCCGCGC CGGCTTGACGTTGCCCAGCAGCACGAAGTCTGGGCCAATACCCACCGGCCGGAAACCGTGCGTTGGCCGGAGTGGTGGGT AGGGCGCGGGAGTGGCGGGCAGGGAGCCTGA
Upstream 100 bases:
>100_bases GCCGGCCGGGCCGCCGTCATCTCGATGCAAGGGCGGTCGAGGACATCGAGCGCCTGGTTGCGAACCCGGGCAAGTTGCGC TGGCCGAGGGGAAGGGGACA
Downstream 100 bases:
>100_bases CAGCACTAAGGTTGGGAGATGAGCCGGAGGGGCAGCTTACGACCAGCTCCAGACATTCAGGGTCTGAGCGATAAACGACC GCCTTCGCCAAATTCCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 196; Mature: 195
Protein sequence:
>196_residues MTGDPPGQGETGSAGYRRPPAATRFVKGQSGNPRGRPSGRHRQLPYDTVLGQMVTVREDGRERRVTAAEAFLLQLTRKGL AGDSAAARASLDAIETARAARRARVVQPSRLRVVLMSFGVGTALQHLGMATKRNRLDEKRVRWELKPWIVEAALARMAPR RLDVAQQHEVWANTHRPETVRWPEWWVGRGSGGQGA
Sequences:
>Translated_196_residues MTGDPPGQGETGSAGYRRPPAATRFVKGQSGNPRGRPSGRHRQLPYDTVLGQMVTVREDGRERRVTAAEAFLLQLTRKGL AGDSAAARASLDAIETARAARRARVVQPSRLRVVLMSFGVGTALQHLGMATKRNRLDEKRVRWELKPWIVEAALARMAPR RLDVAQQHEVWANTHRPETVRWPEWWVGRGSGGQGA >Mature_195_residues TGDPPGQGETGSAGYRRPPAATRFVKGQSGNPRGRPSGRHRQLPYDTVLGQMVTVREDGRERRVTAAEAFLLQLTRKGLA GDSAAARASLDAIETARAARRARVVQPSRLRVVLMSFGVGTALQHLGMATKRNRLDEKRVRWELKPWIVEAALARMAPRR LDVAQQHEVWANTHRPETVRWPEWWVGRGSGGQGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21688; Mature: 21557
Theoretical pI: Translated: 12.10; Mature: 12.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGDPPGQGETGSAGYRRPPAATRFVKGQSGNPRGRPSGRHRQLPYDTVLGQMVTVREDG CCCCCCCCCCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC RERRVTAAEAFLLQLTRKGLAGDSAAARASLDAIETARAARRARVVQPSRLRVVLMSFGV CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHCH GTALQHLGMATKRNRLDEKRVRWELKPWIVEAALARMAPRRLDVAQQHEVWANTHRPETV HHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHCCHHHHHHHHHCCCCCCCC RWPEWWVGRGSGGQGA CCCHHEEECCCCCCCC >Mature Secondary Structure TGDPPGQGETGSAGYRRPPAATRFVKGQSGNPRGRPSGRHRQLPYDTVLGQMVTVREDG CCCCCCCCCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC RERRVTAAEAFLLQLTRKGLAGDSAAARASLDAIETARAARRARVVQPSRLRVVLMSFGV CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHCH GTALQHLGMATKRNRLDEKRVRWELKPWIVEAALARMAPRRLDVAQQHEVWANTHRPETV HHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHCCHHHHHHHHHCCCCCCCC RWPEWWVGRGSGGQGA CCCHHEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA