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The map label for this gene is cycH [H]

Identifier: 87199414

GI number: 87199414

Start: 1436386

End: 1437084

Strand: Direct

Name: cycH [H]

Synonym: Saro_1393

Alternate gene names: 87199414

Gene position: 1436386-1437084 (Clockwise)

Preceding gene: 87199413

Following gene: 87199415

Centisome position: 40.33

GC content: 68.81

Gene sequence:

>699_bases
ATGACCTGGGTGCTCGTCGTTCTGCTCGCCGGGGCCGTGTTCCTCGCGCTGGCCTTCGTCCTGAAGATGCCGCGCGCTGG
GTGGGAGCTTTCGGGCGCCGCGCTGCTCGTCGGGATCGCCGGCTATGCGTTGCAAGGCAGCCCCGATCTTCCCGGCGCTC
CCAAGGCCCCGGTCGAGAACAAGCGCGCCGCCGACGAGGCTCTGATCAAGCAGCGCCAGCAGATGGGCGACAGCTTCGCC
AAGGGCCAGAGCTGGCTGATCCTTGCCGACGGCCTCGCTCGCCAGGGCCAGTACGGCGCTGCTGCCGAAGTCCTGCGCAA
GGGCGCCGAGCAGTTTCCGCAAGATGCCGACATCTGGGTGTCGCTGGGCAACGCACTGGTCGGTCACAGCGACGGCCTGA
TCACGCCCGCCGCGCAATATGCCTTCCAGAAGGCGGCCCGCATCGCGCCGGATCATCCCGGTCCGCCTTTCTTCATGGGC
CTTGCGCTCGCCCAGTCCGGTCGCCTGCCGGAAGCGCGCGCGATCTGGGCAGAACTTCTGCGCCGTTCTCCCGCCGACGC
TCCGTATCGGGCCGATCTTTCGGAGCGAATCCAGCGGATCGATTCGATGCTGGCCATGGCGGCGGGTGGCGGCACGGCCG
GCGCGCCGGTCCCGGCCCCCGCGCCGATGGCTGATTCGTCTTCTCAAGTGTCTGAGTAG

Upstream 100 bases:

>100_bases
TCATGTGGCCGCTCTTCGCCGCGCCGCTGGTGATCCTGTTGCTGGCCGCCGTGCTGCTGCGCGGACGGTTCCGGCGCGGC
GGCAAGCAGGAGAACGGCGA

Downstream 100 bases:

>100_bases
GAGCGATAAAATGCGGGTCCGGAACGCTCTTTCGACCGGCCCGTTGAGCCAATGTCCCCACCCGTTTCCTCCCATTGCAG
GGCCATTGGGGCAGTGCTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MTWVLVVLLAGAVFLALAFVLKMPRAGWELSGAALLVGIAGYALQGSPDLPGAPKAPVENKRAADEALIKQRQQMGDSFA
KGQSWLILADGLARQGQYGAAAEVLRKGAEQFPQDADIWVSLGNALVGHSDGLITPAAQYAFQKAARIAPDHPGPPFFMG
LALAQSGRLPEARAIWAELLRRSPADAPYRADLSERIQRIDSMLAMAAGGGTAGAPVPAPAPMADSSSQVSE

Sequences:

>Translated_232_residues
MTWVLVVLLAGAVFLALAFVLKMPRAGWELSGAALLVGIAGYALQGSPDLPGAPKAPVENKRAADEALIKQRQQMGDSFA
KGQSWLILADGLARQGQYGAAAEVLRKGAEQFPQDADIWVSLGNALVGHSDGLITPAAQYAFQKAARIAPDHPGPPFFMG
LALAQSGRLPEARAIWAELLRRSPADAPYRADLSERIQRIDSMLAMAAGGGTAGAPVPAPAPMADSSSQVSE
>Mature_231_residues
TWVLVVLLAGAVFLALAFVLKMPRAGWELSGAALLVGIAGYALQGSPDLPGAPKAPVENKRAADEALIKQRQQMGDSFAK
GQSWLILADGLARQGQYGAAAEVLRKGAEQFPQDADIWVSLGNALVGHSDGLITPAAQYAFQKAARIAPDHPGPPFFMGL
ALAQSGRLPEARAIWAELLRRSPADAPYRADLSERIQRIDSMLAMAAGGGTAGAPVPAPAPMADSSSQVSE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24249; Mature: 24118

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWVLVVLLAGAVFLALAFVLKMPRAGWELSGAALLVGIAGYALQGSPDLPGAPKAPVEN
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
KRAADEALIKQRQQMGDSFAKGQSWLILADGLARQGQYGAAAEVLRKGAEQFPQDADIWV
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCHHHHHHHHHHHHCCCCCHHHH
SLGNALVGHSDGLITPAAQYAFQKAARIAPDHPGPPFFMGLALAQSGRLPEARAIWAELL
HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
RRSPADAPYRADLSERIQRIDSMLAMAAGGGTAGAPVPAPAPMADSSSQVSE
HCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TWVLVVLLAGAVFLALAFVLKMPRAGWELSGAALLVGIAGYALQGSPDLPGAPKAPVEN
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
KRAADEALIKQRQQMGDSFAKGQSWLILADGLARQGQYGAAAEVLRKGAEQFPQDADIWV
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCHHHHHHHHHHHHCCCCCHHHH
SLGNALVGHSDGLITPAAQYAFQKAARIAPDHPGPPFFMGLALAQSGRLPEARAIWAELL
HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
RRSPADAPYRADLSERIQRIDSMLAMAAGGGTAGAPVPAPAPMADSSSQVSE
HCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8231805; 12597275 [H]