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The map label for this gene is yjfH [C]

Identifier: 87199385

GI number: 87199385

Start: 1412258

End: 1413073

Strand: Reverse

Name: yjfH [C]

Synonym: Saro_1364

Alternate gene names: 87199385

Gene position: 1413073-1412258 (Counterclockwise)

Preceding gene: 87199389

Following gene: 87199384

Centisome position: 39.68

GC content: 68.5

Gene sequence:

>816_bases
ATGCCCCGTCAAGACGATCAACCCAAGGGCCGCGCCCTGCGTGGCCGCGCCGGCCGCAACCGCAGCGGTCGCGGTTCGGG
CCGGGGAAGCGCGGGCGCCATCCGCCTGTGGGGCCGCCATGCAGTCGAGGCGGCGCTGACCAACCCCAACCGCGATGCAA
AGAAGCTGTGGGGAACGCGCGAAGCAATCCAGGCGATGCTCGACGATCACGACGCCGAACTGCCCGCTTCGCTTCCAGTG
GAATACGCCCAGGCTGCCGATCTCGGACGCCTCGTTGCCAAGGACGCCCCGCACCAGGGCCTCGTCCTCGACTGCGCTCC
GCTCGATGACGTGGTCCTCGACGACGTTCTGGACGAAGCCGAAGGCCGCACCATCGTCGTACTCGATTCGGTGACCGACC
CGCACAACGTCGGCGCGATCCTGCGATCCTGCGCCGCATTCGACGTCGCAGCGCTCGTCACACAGGACAGGCACGCCCCA
CCCGAATCGGGCACCCTTGCCAAGTCCGCGTCGGGCGCGCTGGAGATCGTGCCGTGGGTGCGCGTCGTGAACCTGTCACG
CGCGCTGGAGCGGATGAGCGAGGAAGGCTACTGGCGCATCGGCCTCGATGGCGATGGCAAGGCCGTGTTCCCTGCCGCCC
TGCCCTCGGGCCCTGTGGCACTCGTGCTCGGCGCTGAAGGCGAAGGATTGCGCCACAACGTCGCCCAGCACTGCGATTCG
ATCGCGCGGCTACCCATTGCCTCGGCCATCGAAAGCCTTAACGTCTCGAACGCCGCGGCGATCGCGCTCTACGCCGTCGC
AACGCGCGAAGGCTGA

Upstream 100 bases:

>100_bases
GCCGAGAGGCGGCCCCTTTGGCGAAGCATGACTTGCCTGTCAATGGGTAGGCTGGCATGCGCGGCACGAATTTTTCCACG
CTTTCACGAAAAGGTGCCAG

Downstream 100 bases:

>100_bases
TGGGATACCAGGAGGGGCACATGCGTCGATCGAGTGCAATCGCGGCGGTCGTCGCAGGGCTTCTCCTCCTGGCCGGGTGC
ATGGTTCTTCCAGGCCGGTT

Product: RNA methyltransferase TrmH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MPRQDDQPKGRALRGRAGRNRSGRGSGRGSAGAIRLWGRHAVEAALTNPNRDAKKLWGTREAIQAMLDDHDAELPASLPV
EYAQAADLGRLVAKDAPHQGLVLDCAPLDDVVLDDVLDEAEGRTIVVLDSVTDPHNVGAILRSCAAFDVAALVTQDRHAP
PESGTLAKSASGALEIVPWVRVVNLSRALERMSEEGYWRIGLDGDGKAVFPAALPSGPVALVLGAEGEGLRHNVAQHCDS
IARLPIASAIESLNVSNAAAIALYAVATREG

Sequences:

>Translated_271_residues
MPRQDDQPKGRALRGRAGRNRSGRGSGRGSAGAIRLWGRHAVEAALTNPNRDAKKLWGTREAIQAMLDDHDAELPASLPV
EYAQAADLGRLVAKDAPHQGLVLDCAPLDDVVLDDVLDEAEGRTIVVLDSVTDPHNVGAILRSCAAFDVAALVTQDRHAP
PESGTLAKSASGALEIVPWVRVVNLSRALERMSEEGYWRIGLDGDGKAVFPAALPSGPVALVLGAEGEGLRHNVAQHCDS
IARLPIASAIESLNVSNAAAIALYAVATREG
>Mature_270_residues
PRQDDQPKGRALRGRAGRNRSGRGSGRGSAGAIRLWGRHAVEAALTNPNRDAKKLWGTREAIQAMLDDHDAELPASLPVE
YAQAADLGRLVAKDAPHQGLVLDCAPLDDVVLDDVLDEAEGRTIVVLDSVTDPHNVGAILRSCAAFDVAALVTQDRHAPP
ESGTLAKSASGALEIVPWVRVVNLSRALERMSEEGYWRIGLDGDGKAVFPAALPSGPVALVLGAEGEGLRHNVAQHCDSI
ARLPIASAIESLNVSNAAAIALYAVATREG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=191, Percent_Identity=28.7958115183246, Blast_Score=76, Evalue=3e-14,
Organism=Escherichia coli, GI1790623, Length=172, Percent_Identity=37.7906976744186, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1788935, Length=140, Percent_Identity=32.1428571428571, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28539; Mature: 28408

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRQDDQPKGRALRGRAGRNRSGRGSGRGSAGAIRLWGRHAVEAALTNPNRDAKKLWGTR
CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCHHHHHHCCCH
EAIQAMLDDHDAELPASLPVEYAQAADLGRLVAKDAPHQGLVLDCAPLDDVVLDDVLDEA
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHC
EGRTIVVLDSVTDPHNVGAILRSCAAFDVAALVTQDRHAPPESGTLAKSASGALEIVPWV
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCEEHHHHH
RVVNLSRALERMSEEGYWRIGLDGDGKAVFPAALPSGPVALVLGAEGEGLRHNVAQHCDS
HHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHH
IARLPIASAIESLNVSNAAAIALYAVATREG
HHHCHHHHHHHHCCCCCHHHEEEEEEEECCC
>Mature Secondary Structure 
PRQDDQPKGRALRGRAGRNRSGRGSGRGSAGAIRLWGRHAVEAALTNPNRDAKKLWGTR
CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCHHHHHHCCCH
EAIQAMLDDHDAELPASLPVEYAQAADLGRLVAKDAPHQGLVLDCAPLDDVVLDDVLDEA
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHC
EGRTIVVLDSVTDPHNVGAILRSCAAFDVAALVTQDRHAPPESGTLAKSASGALEIVPWV
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCEEHHHHH
RVVNLSRALERMSEEGYWRIGLDGDGKAVFPAALPSGPVALVLGAEGEGLRHNVAQHCDS
HHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHH
IARLPIASAIESLNVSNAAAIALYAVATREG
HHHCHHHHHHHHCCCCCHHHEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]