| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199384
Identifier: 87199384
GI number: 87199384
Start: 1411377
End: 1412237
Strand: Reverse
Name: 87199384
Synonym: Saro_1363
Alternate gene names: NA
Gene position: 1412237-1411377 (Counterclockwise)
Preceding gene: 87199385
Following gene: 87199381
Centisome position: 39.65
GC content: 65.27
Gene sequence:
>861_bases ATGCGTCGATCGAGTGCAATCGCGGCGGTCGTCGCAGGGCTTCTCCTCCTGGCCGGGTGCATGGTTCTTCCAGGCCGGTT CGCGTCCGACCTCGCCTTGCGCAAGGACGGCACGTTCGACTTCTCCTACAAGGGCGAGATCTACCTGCTCGCCCTGTCGA AGATGGCGGCGGAAGAGCGCAACCGGAAATCCTCAGACGCGCAGTTCGAACCGTCGACCTGCTACAGCGACGAGACCGGC GACGAACGCGAATGCACCTCGGACGAACTCGCCGCGCAGAAGAAGTCGTGGGAAGAGGACGTCGCCTCCAGCAAGGCCGC GGCGGAGGAAAAGAAGAAGTCCGACGAACAGATGATGAAGGCCATGCTTGGCGGCATCGATCCCTCCGATCCGCGCGCCG CGCAGGAGTTCGCAGACCGGCTGCGCCGCCAGAAGGGCTGGAAGTCGGTCGTCGACAAGGGTGATGGCCGCTTCGAGGTG GAATACGCGATCTCCGGGCGTCTCGACCACGACTTCACTTTCCCGACCATCGAGAAGCTGCCGATGATCACGCCTTTCGT CACGCTGATCCGCCGCGCGGACGGCAGCGTGCGGGTCGAAGCACCGGCCTTTGCCTCGGGCGCGGCCAATTCGCCATGGA TGGGCATGGCGACGGCCGCTGCCGACGAAAAGAGCGAGAAGGCCGGCGGGGACGGCATGCCTGTACTCGACGGCGTGCTG ACTCTGGTCACCGACGGCGAAATTCTCGCCAACAACACCGACGAGGGACCGCTGGCCGTGCCGACCGGCCGCAAGCTCGA ATGGATCATCAATGCCCGCACCGCGACAGCGCCGACGGCCCTGGTCCGCCTGACCCGTTAA
Upstream 100 bases:
>100_bases TTGCCTCGGCCATCGAAAGCCTTAACGTCTCGAACGCCGCGGCGATCGCGCTCTACGCCGTCGCAACGCGCGAAGGCTGA TGGGATACCAGGAGGGGCAC
Downstream 100 bases:
>100_bases CCCGCACCTGCCCGGCCGCAGGCACCCGGCAAAAAGAAAACCGCGCCGCCCGGATGGGCTGGCGCGGTTTCTTTCGATCG CATGCGCCCGACCATTGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 286; Mature: 286
Protein sequence:
>286_residues MRRSSAIAAVVAGLLLLAGCMVLPGRFASDLALRKDGTFDFSYKGEIYLLALSKMAAEERNRKSSDAQFEPSTCYSDETG DERECTSDELAAQKKSWEEDVASSKAAAEEKKKSDEQMMKAMLGGIDPSDPRAAQEFADRLRRQKGWKSVVDKGDGRFEV EYAISGRLDHDFTFPTIEKLPMITPFVTLIRRADGSVRVEAPAFASGAANSPWMGMATAAADEKSEKAGGDGMPVLDGVL TLVTDGEILANNTDEGPLAVPTGRKLEWIINARTATAPTALVRLTR
Sequences:
>Translated_286_residues MRRSSAIAAVVAGLLLLAGCMVLPGRFASDLALRKDGTFDFSYKGEIYLLALSKMAAEERNRKSSDAQFEPSTCYSDETG DERECTSDELAAQKKSWEEDVASSKAAAEEKKKSDEQMMKAMLGGIDPSDPRAAQEFADRLRRQKGWKSVVDKGDGRFEV EYAISGRLDHDFTFPTIEKLPMITPFVTLIRRADGSVRVEAPAFASGAANSPWMGMATAAADEKSEKAGGDGMPVLDGVL TLVTDGEILANNTDEGPLAVPTGRKLEWIINARTATAPTALVRLTR >Mature_286_residues MRRSSAIAAVVAGLLLLAGCMVLPGRFASDLALRKDGTFDFSYKGEIYLLALSKMAAEERNRKSSDAQFEPSTCYSDETG DERECTSDELAAQKKSWEEDVASSKAAAEEKKKSDEQMMKAMLGGIDPSDPRAAQEFADRLRRQKGWKSVVDKGDGRFEV EYAISGRLDHDFTFPTIEKLPMITPFVTLIRRADGSVRVEAPAFASGAANSPWMGMATAAADEKSEKAGGDGMPVLDGVL TLVTDGEILANNTDEGPLAVPTGRKLEWIINARTATAPTALVRLTR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30961; Mature: 30961
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRSSAIAAVVAGLLLLAGCMVLPGRFASDLALRKDGTFDFSYKGEIYLLALSKMAAEER CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEECCCEEEEEHHHHHHHHH NRKSSDAQFEPSTCYSDETGDERECTSDELAAQKKSWEEDVASSKAAAEEKKKSDEQMMK CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMLGGIDPSDPRAAQEFADRLRRQKGWKSVVDKGDGRFEVEYAISGRLDHDFTFPTIEKL HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHC PMITPFVTLIRRADGSVRVEAPAFASGAANSPWMGMATAAADEKSEKAGGDGMPVLDGVL CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCHHHHHHH TLVTDGEILANNTDEGPLAVPTGRKLEWIINARTATAPTALVRLTR HHHCCCEEEECCCCCCCEECCCCCCEEEEEECCCCCCCHHHHEECC >Mature Secondary Structure MRRSSAIAAVVAGLLLLAGCMVLPGRFASDLALRKDGTFDFSYKGEIYLLALSKMAAEER CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEECCCEEEEEHHHHHHHHH NRKSSDAQFEPSTCYSDETGDERECTSDELAAQKKSWEEDVASSKAAAEEKKKSDEQMMK CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMLGGIDPSDPRAAQEFADRLRRQKGWKSVVDKGDGRFEVEYAISGRLDHDFTFPTIEKL HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHC PMITPFVTLIRRADGSVRVEAPAFASGAANSPWMGMATAAADEKSEKAGGDGMPVLDGVL CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCHHHHHHH TLVTDGEILANNTDEGPLAVPTGRKLEWIINARTATAPTALVRLTR HHHCCCEEEECCCCCCCEECCCCCCEEEEEECCCCCCCHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA