| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199365
Identifier: 87199365
GI number: 87199365
Start: 1386230
End: 1388293
Strand: Direct
Name: 87199365
Synonym: Saro_1344
Alternate gene names: NA
Gene position: 1386230-1388293 (Clockwise)
Preceding gene: 87199364
Following gene: 87199367
Centisome position: 38.92
GC content: 62.31
Gene sequence:
>2064_bases ATGAGCATTTTCATTGGGATCGATGATGCCGACAATCCGCCATTTTTCGGCGATGGGGGCACGACGGTCACTCGCGGCAA GGGGGGCAGCGACACGCTGATCGGCGGCAATGCGACGTTCAGCGGCAGCAGCGTCTACAACACGCTCATTGGCGATTGGC GCAACATTGCATCTTCGGCCCGAGGGGGAGAAGATCTCCTGACGGGCGGCGGCGCCTTCGGAAGCGAAAGCATCGCCGTC AATCTCCTCTGCGGCGATGCCTATGGCATCTTCGGTAGCGCCAAGGGCGGTAATGACACCCTTGCCGGTGGCGAAGCCGT CCGCGGTGCGACTGTCACCAACGACCTTTACGGCGACGCATACAGCATGAGCGACACCGCCAAGGGCGGAGACGATACCC TGACGGGCGGCGCCGCTTCGGGGCGGGCGGGCGCGACGACCTTCAATTTCCTGTACGGCGATGCCTATGACTTGACCCTC AACGCCAAGGGCGGGAACGATATCCTGACGGGCGGCGACGCCTCTTATGCGGGAGCGGTCAATGTCCTCTATGGCGATGC ATATTCCATGTCCGGCCATACCAAGGGCGGTGAAGACGTTCTGATCGGCGGCATGACAAATCGGGGGGATATCGAAAATA CCCTTTATGGCGATGCGTTCAGCCTGTCCGGCTATGCCAAGGGTGGCAATGACACCCTGGTTGGGGGCGACGAAGGGCGC TACGGGTTTGTCACCAATACCCTCTTCGGCGATGCGCACGATATGTCCGGCCGAGCCAGTGGCGGCGACGATACCCTGAC CGGCGGCGGGGGCGAGCGCAATTACCCTGCCACCAACACACTCTATGGCGATGCCTATTCGCTCTCGGACTTCGCCAAGG GTGGCAATGATGTCCTGACTGGCGGCGGCGTCGGCTATAGAGGGGACGTCACCAATACCCTGGTTGGCGACGCATACGGC ATGGGCGGTTCCGCCAAGGGGGGCGACGATGTCCTGACCGGTGGGAACCTCAGCGGTGTAGGCACGATCGAGAACATTCT CTTCGGTGACGCGGCCGGCAGCGATGACGGATCGGGAGGAATGACAGCCGACGCCAAAGGTGGTGCGGACAACCTGACCG GGGGTAGCGTTTTCGGCGATGGTTCCGTCACCAATACGCTTTATGGCGACGCATATCGGATTTCCGGTACCGCCCATGCA GGCAAGGATGTTCTGACGGGCGGCAGCAATAGCGGCAGCGGCAGTGTTTCAAACACCCTCTACGGCGACGCGCGCAATGC CGACGCCGGCGGCGGTGCCAATGGCGGGGATGACCACCTGACGGGTGGCGCCAACAGCGGCGTGGGGGATGTTCGCAACG GCCTCGTCGGAGACTTCCTCGAGATGTATGCCTCCGGCGCGGGAGGCAACGATCGGTTGACCGGCGGCAACATGAGCAGC GGCAGCTACCTTCTCAATGATCTGTTCGGAGATGCCTTCCGCATGGCCGGCGTTGTCATCGGCGGCAGAGATCACCTTGC CGGGGGCGACATGAGCGGCGGCACCGAACTGGTCAACAATATCCGAGGCGACGCGAGCCAGATGTTCAACGCCACGCAAG GCGGTGACGACGTGCTGGCGGGCGGAAACAACAGCGGCACCGGCACGGTCACCAATCTTCTGCTGGGCGAGGGCGAAGAA ATGCACGATTTCGCCAGGGGCGGTGGCGACATCCTTCATGCCGGGGCAGCAACGGCTGGCGGCGCGGTGATCAATGACAT GTGGGGCGACGCCCAGGTCATGTCCGACACGGCCCACGGAGGGAGTGACACATTCGTTTTCAGGGACAATGCGGCACTCG GCCAGACTGTCGGGGCACAAAATCGCATCCATGACTTCAGCCAGGACCAGCACGACGTCATTCACTTCGTCGGCGTTGCG GGCGTCACGGCGTTCAGCGACCTTGTGTTCGAGGTCACGACGTTCAACGATGTCGCCAGCACAGTCATTCACGCGGGGGC TGACGCCGTCGTTCTCGTTGGCTTTACGGGCAATCTGACTGCCGACGACTTCGTTTTCCTATGA
Upstream 100 bases:
>100_bases CCGGCGTAGGGCTGGACCGTACCTCCGAATAGTAGGAATTAGGGGGGGCGCCACATGGTATGCTTTGCGTCGTTCGGCCT GGTGATCATCAGGAGGCGTT
Downstream 100 bases:
>100_bases GTGCGGCCTGCGCATGCATGGGTCCAATTCAGTCGGTAGAACCGTTGGCCTTCCAGATCGGCGAGACGAGCACGATTACA GCCAGAACCAGATTGGTGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 687; Mature: 686
Protein sequence:
>687_residues MSIFIGIDDADNPPFFGDGGTTVTRGKGGSDTLIGGNATFSGSSVYNTLIGDWRNIASSARGGEDLLTGGGAFGSESIAV NLLCGDAYGIFGSAKGGNDTLAGGEAVRGATVTNDLYGDAYSMSDTAKGGDDTLTGGAASGRAGATTFNFLYGDAYDLTL NAKGGNDILTGGDASYAGAVNVLYGDAYSMSGHTKGGEDVLIGGMTNRGDIENTLYGDAFSLSGYAKGGNDTLVGGDEGR YGFVTNTLFGDAHDMSGRASGGDDTLTGGGGERNYPATNTLYGDAYSLSDFAKGGNDVLTGGGVGYRGDVTNTLVGDAYG MGGSAKGGDDVLTGGNLSGVGTIENILFGDAAGSDDGSGGMTADAKGGADNLTGGSVFGDGSVTNTLYGDAYRISGTAHA GKDVLTGGSNSGSGSVSNTLYGDARNADAGGGANGGDDHLTGGANSGVGDVRNGLVGDFLEMYASGAGGNDRLTGGNMSS GSYLLNDLFGDAFRMAGVVIGGRDHLAGGDMSGGTELVNNIRGDASQMFNATQGGDDVLAGGNNSGTGTVTNLLLGEGEE MHDFARGGGDILHAGAATAGGAVINDMWGDAQVMSDTAHGGSDTFVFRDNAALGQTVGAQNRIHDFSQDQHDVIHFVGVA GVTAFSDLVFEVTTFNDVASTVIHAGADAVVLVGFTGNLTADDFVFL
Sequences:
>Translated_687_residues MSIFIGIDDADNPPFFGDGGTTVTRGKGGSDTLIGGNATFSGSSVYNTLIGDWRNIASSARGGEDLLTGGGAFGSESIAV NLLCGDAYGIFGSAKGGNDTLAGGEAVRGATVTNDLYGDAYSMSDTAKGGDDTLTGGAASGRAGATTFNFLYGDAYDLTL NAKGGNDILTGGDASYAGAVNVLYGDAYSMSGHTKGGEDVLIGGMTNRGDIENTLYGDAFSLSGYAKGGNDTLVGGDEGR YGFVTNTLFGDAHDMSGRASGGDDTLTGGGGERNYPATNTLYGDAYSLSDFAKGGNDVLTGGGVGYRGDVTNTLVGDAYG MGGSAKGGDDVLTGGNLSGVGTIENILFGDAAGSDDGSGGMTADAKGGADNLTGGSVFGDGSVTNTLYGDAYRISGTAHA GKDVLTGGSNSGSGSVSNTLYGDARNADAGGGANGGDDHLTGGANSGVGDVRNGLVGDFLEMYASGAGGNDRLTGGNMSS GSYLLNDLFGDAFRMAGVVIGGRDHLAGGDMSGGTELVNNIRGDASQMFNATQGGDDVLAGGNNSGTGTVTNLLLGEGEE MHDFARGGGDILHAGAATAGGAVINDMWGDAQVMSDTAHGGSDTFVFRDNAALGQTVGAQNRIHDFSQDQHDVIHFVGVA GVTAFSDLVFEVTTFNDVASTVIHAGADAVVLVGFTGNLTADDFVFL >Mature_686_residues SIFIGIDDADNPPFFGDGGTTVTRGKGGSDTLIGGNATFSGSSVYNTLIGDWRNIASSARGGEDLLTGGGAFGSESIAVN LLCGDAYGIFGSAKGGNDTLAGGEAVRGATVTNDLYGDAYSMSDTAKGGDDTLTGGAASGRAGATTFNFLYGDAYDLTLN AKGGNDILTGGDASYAGAVNVLYGDAYSMSGHTKGGEDVLIGGMTNRGDIENTLYGDAFSLSGYAKGGNDTLVGGDEGRY GFVTNTLFGDAHDMSGRASGGDDTLTGGGGERNYPATNTLYGDAYSLSDFAKGGNDVLTGGGVGYRGDVTNTLVGDAYGM GGSAKGGDDVLTGGNLSGVGTIENILFGDAAGSDDGSGGMTADAKGGADNLTGGSVFGDGSVTNTLYGDAYRISGTAHAG KDVLTGGSNSGSGSVSNTLYGDARNADAGGGANGGDDHLTGGANSGVGDVRNGLVGDFLEMYASGAGGNDRLTGGNMSSG SYLLNDLFGDAFRMAGVVIGGRDHLAGGDMSGGTELVNNIRGDASQMFNATQGGDDVLAGGNNSGTGTVTNLLLGEGEEM HDFARGGGDILHAGAATAGGAVINDMWGDAQVMSDTAHGGSDTFVFRDNAALGQTVGAQNRIHDFSQDQHDVIHFVGVAG VTAFSDLVFEVTTFNDVASTVIHAGADAVVLVGFTGNLTADDFVFL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68201; Mature: 68070
Theoretical pI: Translated: 3.92; Mature: 3.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIFIGIDDADNPPFFGDGGTTVTRGKGGSDTLIGGNATFSGSSVYNTLIGDWRNIASSA CEEEEECCCCCCCCEECCCCCEEECCCCCCCCEECCCCEECCCHHHHHHHHHHHHHHHHC RGGEDLLTGGGAFGSESIAVNLLCGDAYGIFGSAKGGNDTLAGGEAVRGATVTNDLYGDA CCCCCEEECCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCCC YSMSDTAKGGDDTLTGGAASGRAGATTFNFLYGDAYDLTLNAKGGNDILTGGDASYAGAV CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCEEECCCCCCCCEE NVLYGDAYSMSGHTKGGEDVLIGGMTNRGDIENTLYGDAFSLSGYAKGGNDTLVGGDEGR EEEECCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCC YGFVTNTLFGDAHDMSGRASGGDDTLTGGGGERNYPATNTLYGDAYSLSDFAKGGNDVLT EEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEE GGGVGYRGDVTNTLVGDAYGMGGSAKGGDDVLTGGNLSGVGTIENILFGDAAGSDDGSGG CCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHEECCCCCCCCCCCC MTADAKGGADNLTGGSVFGDGSVTNTLYGDAYRISGTAHAGKDVLTGGSNSGSGSVSNTL EEECCCCCCCCCCCCCEECCCCCCCEECCCEEEECCCCCCCCCEEECCCCCCCCCCCCCE YGDARNADAGGGANGGDDHLTGGANSGVGDVRNGLVGDFLEMYASGAGGNDRLTGGNMSS ECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC GSYLLNDLFGDAFRMAGVVIGGRDHLAGGDMSGGTELVNNIRGDASQMFNATQGGDDVLA CHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCCEEE GGNNSGTGTVTNLLLGEGEEMHDFARGGGDILHAGAATAGGAVINDMWGDAQVMSDTAHG CCCCCCCCCEEEEECCCCHHHHHHHCCCCCEEECCCCCCCCCEEECCCCCCEEEECCCCC GSDTFVFRDNAALGQTVGAQNRIHDFSQDQHDVIHFVGVAGVTAFSDLVFEVTTFNDVAS CCCEEEEECCCCCCCCCCCCHHHHHCCCCHHHHEEHHHHHHHHHHHHHHEEEECHHHHHH TVIHAGADAVVLVGFTGNLTADDFVFL HHHHCCCCEEEEEEECCCCCCCCEEEC >Mature Secondary Structure SIFIGIDDADNPPFFGDGGTTVTRGKGGSDTLIGGNATFSGSSVYNTLIGDWRNIASSA EEEEECCCCCCCCEECCCCCEEECCCCCCCCEECCCCEECCCHHHHHHHHHHHHHHHHC RGGEDLLTGGGAFGSESIAVNLLCGDAYGIFGSAKGGNDTLAGGEAVRGATVTNDLYGDA CCCCCEEECCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCCC YSMSDTAKGGDDTLTGGAASGRAGATTFNFLYGDAYDLTLNAKGGNDILTGGDASYAGAV CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCEEECCCCCCCCEE NVLYGDAYSMSGHTKGGEDVLIGGMTNRGDIENTLYGDAFSLSGYAKGGNDTLVGGDEGR EEEECCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCC YGFVTNTLFGDAHDMSGRASGGDDTLTGGGGERNYPATNTLYGDAYSLSDFAKGGNDVLT EEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEE GGGVGYRGDVTNTLVGDAYGMGGSAKGGDDVLTGGNLSGVGTIENILFGDAAGSDDGSGG CCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHEECCCCCCCCCCCC MTADAKGGADNLTGGSVFGDGSVTNTLYGDAYRISGTAHAGKDVLTGGSNSGSGSVSNTL EEECCCCCCCCCCCCCEECCCCCCCEECCCEEEECCCCCCCCCEEECCCCCCCCCCCCCE YGDARNADAGGGANGGDDHLTGGANSGVGDVRNGLVGDFLEMYASGAGGNDRLTGGNMSS ECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC GSYLLNDLFGDAFRMAGVVIGGRDHLAGGDMSGGTELVNNIRGDASQMFNATQGGDDVLA CHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCCEEE GGNNSGTGTVTNLLLGEGEEMHDFARGGGDILHAGAATAGGAVINDMWGDAQVMSDTAHG CCCCCCCCCEEEEECCCCHHHHHHHCCCCCEEECCCCCCCCCEEECCCCCCEEEECCCCC GSDTFVFRDNAALGQTVGAQNRIHDFSQDQHDVIHFVGVAGVTAFSDLVFEVTTFNDVAS CCCEEEEECCCCCCCCCCCCHHHHHCCCCHHHHEEHHHHHHHHHHHHHHEEEECHHHHHH TVIHAGADAVVLVGFTGNLTADDFVFL HHHHCCCCEEEEEEECCCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA