| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is iorA [H]
Identifier: 87199367
GI number: 87199367
Start: 1389434
End: 1389961
Strand: Direct
Name: iorA [H]
Synonym: Saro_1346
Alternate gene names: 87199367
Gene position: 1389434-1389961 (Clockwise)
Preceding gene: 87199365
Following gene: 87199368
Centisome position: 39.01
GC content: 67.8
Gene sequence:
>528_bases ATGACGAAGCTCAGGGTCAACGGTGCGGAGCGAGAGGTCAAGTCGGGTTCCGATACGCCGCTGCTCTACGTCCTGCGCAA CGAGCTGGGCGTGATGACCCCGAAGTTCGGGTGCGGCATGGCGCAGTGCGGGGCCTGCTCGGTGCTGGTCGACGGCGAGG AGACGCGGGCCTGCGTGACCCCGGTTGCCGCCATCGAGGGCAAGGAAGTGACTACGGTCGATGGCCTCCCCGCACGCTGG GCCGCACAGCGCGGGCTTTCGGCGGAGCAGGCGGCCGGCAAGCTCCATCCGGTGCAGGAAGCCTGGATCGCGGAGCAGGT GCCGCAGTGCGGGATCTGCCAGTTCGGCATGATGATCAAGATTACCGAACTGCTCGAGGCCAACCCCAAGCCCACCGATG GCGATATCAAGGAGGCGCTGACCACTTCCGGCCCTTCGCCCCACCTGTGCCGCTGCGGCAGCTACGCCGCGATCCTGGAA GGCGCCCATCGCGCCGCGCGGCTCATGGCCGAAGGAGGTGCGAAGTGA
Upstream 100 bases:
>100_bases AACTGCCTGCAATCATTGGTGGTCTCAGGCCTGGAGCGGCGCTATCTGGCGTCTGGAATAGGGTGCGGGCAGATTGTCGG CGCACGCCGGGGAGACGGAC
Downstream 100 bases:
>100_bases GCGGAGCCCTTTCCATCCACGGCGCGACGCTCAGCCGCCGGGCCTTTGTCGGTGCCGGGGGCGCGTTGGTCGTCGCGCTC GGCCTGCCGGCCAGCGGCGC
Product: (2Fe-2S)-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 175; Mature: 174
Protein sequence:
>175_residues MTKLRVNGAEREVKSGSDTPLLYVLRNELGVMTPKFGCGMAQCGACSVLVDGEETRACVTPVAAIEGKEVTTVDGLPARW AAQRGLSAEQAAGKLHPVQEAWIAEQVPQCGICQFGMMIKITELLEANPKPTDGDIKEALTTSGPSPHLCRCGSYAAILE GAHRAARLMAEGGAK
Sequences:
>Translated_175_residues MTKLRVNGAEREVKSGSDTPLLYVLRNELGVMTPKFGCGMAQCGACSVLVDGEETRACVTPVAAIEGKEVTTVDGLPARW AAQRGLSAEQAAGKLHPVQEAWIAEQVPQCGICQFGMMIKITELLEANPKPTDGDIKEALTTSGPSPHLCRCGSYAAILE GAHRAARLMAEGGAK >Mature_174_residues TKLRVNGAEREVKSGSDTPLLYVLRNELGVMTPKFGCGMAQCGACSVLVDGEETRACVTPVAAIEGKEVTTVDGLPARWA AQRGLSAEQAAGKLHPVQEAWIAEQVPQCGICQFGMMIKITELLEANPKPTDGDIKEALTTSGPSPHLCRCGSYAAILEG AHRAARLMAEGGAK
Specific function: Specific towards N-containing N-heterocyclic substrates, including isoquinoline, isoquinolin-5-ol, phthalazine and quinazoline [H]
COG id: COG2080
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]
Homologues:
Organism=Homo sapiens, GI91823271, Length=173, Percent_Identity=32.3699421965318, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI1786480, Length=178, Percent_Identity=33.7078651685393, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI1789232, Length=155, Percent_Identity=34.8387096774194, Blast_Score=80, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17540638, Length=170, Percent_Identity=34.1176470588235, Blast_Score=88, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17539860, Length=169, Percent_Identity=29.585798816568, Blast_Score=76, Evalue=7e-15, Organism=Caenorhabditis elegans, GI32566215, Length=169, Percent_Identity=28.9940828402367, Blast_Score=73, Evalue=8e-14, Organism=Drosophila melanogaster, GI17737937, Length=167, Percent_Identity=33.5329341317365, Blast_Score=77, Evalue=5e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002888 - InterPro: IPR006058 - InterPro: IPR012675 - InterPro: IPR001041 [H]
Pfam domain/function: PF00111 Fer2; PF01799 Fer2_2 [H]
EC number: =1.3.99.16 [H]
Molecular weight: Translated: 18436; Mature: 18305
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 8.0 %Cys+Met (Translated Protein) 4.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 7.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKLRVNGAEREVKSGSDTPLLYVLRNELGVMTPKFGCGMAQCGACSVLVDGEETRACVT CCEEECCCCHHHHCCCCCCCEEEEEECHHCCCCCCCCCCCCCCCCEEEEECCCCCCHHHC PVAAIEGKEVTTVDGLPARWAAQRGLSAEQAAGKLHPVQEAWIAEQVPQCGICQFGMMIK HHHHCCCCEEEEECCCCCHHHHHHCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHH ITELLEANPKPTDGDIKEALTTSGPSPHLCRCGSYAAILEGAHRAARLMAEGGAK HHHHHHCCCCCCCCHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TKLRVNGAEREVKSGSDTPLLYVLRNELGVMTPKFGCGMAQCGACSVLVDGEETRACVT CEEECCCCHHHHCCCCCCCEEEEEECHHCCCCCCCCCCCCCCCCEEEEECCCCCCHHHC PVAAIEGKEVTTVDGLPARWAAQRGLSAEQAAGKLHPVQEAWIAEQVPQCGICQFGMMIK HHHHCCCCEEEEECCCCCHHHHHHCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHH ITELLEANPKPTDGDIKEALTTSGPSPHLCRCGSYAAILEGAHRAARLMAEGGAK HHHHHHCCCCCCCCHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7782304; 8157655 [H]