| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199257
Identifier: 87199257
GI number: 87199257
Start: 1286812
End: 1287213
Strand: Reverse
Name: 87199257
Synonym: Saro_1235
Alternate gene names: NA
Gene position: 1287213-1286812 (Counterclockwise)
Preceding gene: 87199258
Following gene: 87199254
Centisome position: 36.14
GC content: 64.93
Gene sequence:
>402_bases ATGTTCAGGAATGCTGTTGGAATCGGCATGGCGGCTGCGCTTGGCCTGTCCGCCACAGCCGCGCGGGCCGAATGGATGAG CGGAAACCAGTTGCGCGACGCCTGCTCGACCTCGGCGCCGGTCGACCGTGCCATGTGCCTGTCATACGTGATCGGCGTAC TCGACGGCCTGCGCTACCTCGACCAGCCCCCGAAAGTGCCAGAGGATGCAACGGCCGGCCAAGTTCGTGACGTGGTGGTG AAGTACCTGGCAGACCATCCGGAGACGCGGAACCAGCAAGGCCGCGCACTCGTGCGGGCAGCCATTGTGAATGCCTGGCC CGACATTCAGTCGAAGGCAGCCGCGAAGGCCGAGACCACCACGCGAAAGAAGGCACGCACCAAACGTCGCACAGCGGGGT AG
Upstream 100 bases:
>100_bases GAACAGGAAGGGTGAAATGCGCCGCCTCCGGTTCGGCGGGCAAAATCCCGGATCGAAACTGCGTCCAGGGTGTTGTCCCG TCGTCTAGACGGGAGTTGCA
Downstream 100 bases:
>100_bases ACGCAGCCTGCGAGGCCAGCGCCCCCTCCCCCGCCCGTCCCGCGAGCGCGAGAAAGGCGGGGGGCCAGCATATGTGGCGG AGCCGTCAGGCAGGCTCGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 133; Mature: 133
Protein sequence:
>133_residues MFRNAVGIGMAAALGLSATAARAEWMSGNQLRDACSTSAPVDRAMCLSYVIGVLDGLRYLDQPPKVPEDATAGQVRDVVV KYLADHPETRNQQGRALVRAAIVNAWPDIQSKAAAKAETTTRKKARTKRRTAG
Sequences:
>Translated_133_residues MFRNAVGIGMAAALGLSATAARAEWMSGNQLRDACSTSAPVDRAMCLSYVIGVLDGLRYLDQPPKVPEDATAGQVRDVVV KYLADHPETRNQQGRALVRAAIVNAWPDIQSKAAAKAETTTRKKARTKRRTAG >Mature_133_residues MFRNAVGIGMAAALGLSATAARAEWMSGNQLRDACSTSAPVDRAMCLSYVIGVLDGLRYLDQPPKVPEDATAGQVRDVVV KYLADHPETRNQQGRALVRAAIVNAWPDIQSKAAAKAETTTRKKARTKRRTAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14282; Mature: 14282
Theoretical pI: Translated: 10.58; Mature: 10.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFRNAVGIGMAAALGLSATAARAEWMSGNQLRDACSTSAPVDRAMCLSYVIGVLDGLRYL CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH DQPPKVPEDATAGQVRDVVVKYLADHPETRNQQGRALVRAAIVNAWPDIQSKAAAKAETT CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH TRKKARTKRRTAG HHHHHHHHHHCCC >Mature Secondary Structure MFRNAVGIGMAAALGLSATAARAEWMSGNQLRDACSTSAPVDRAMCLSYVIGVLDGLRYL CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH DQPPKVPEDATAGQVRDVVVKYLADHPETRNQQGRALVRAAIVNAWPDIQSKAAAKAETT CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH TRKKARTKRRTAG HHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA